Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation

Keywords

Biology, Metabolic pathway, Biochemistry, Quorum sensing, Enzyme

References

• Hidden Markov models for sequence analysis: extension and analysis of the basic methodMaría Victoria Petit Lavall — 1996
• Base-calling of automated sequencer traces using phred. I. Accuracy assessment.Анатольев Алексей Владимирович — 1998
• Arrangement and regulation of the genes for meta-pathway enzymes required for degradation of phenol in Comamonas testosteroni TA441.善也 塚本 — 2000
• Anaerobic degradation of monoaromatic hydrocarbonsC. Kubik, E. Galas, Barbara Sikora — 2004
• Biochemical and genetic evidence of benzylsuccinate synthase intoluene-degrading, ferric iron-reducing Geobacter metallireducensStaci R. Kane, Harry R. Beller, Tina C. Legler — 2004
• Cloning and Characterization of Polyphosphate Kinase and Exopolyphosphatase Genes from Pseudomonas aeruginosa 8830Anna Zago, Sudha Chugani, A. M. Chakrabarty — 1999
• Scoredist: A simple and robust protein sequence distance estimatorErik L. L. Sonnhammer, Volker Hollich — 2005
• Indolepyruvate ferredoxin oxidoreductase from the hyperthermophilic archaeon Pyrococcus furiosus. A new enzyme involved in peptide fermentation.X. Mai, Michael W. W. Adams — 1994
• The Escherichia coli ATP‐binding cassette (ABC) proteinsKenneth J. Linton, Christopher F. Higgins — 1998
• An overview of the genome of Nostoc punctiforme, a multicellular, symbiotic cyanobacteriumJohn C. Meeks, Jeff Elhai, Teresa Thiel — 2004
• Analysis of the Novel Benzylsuccinate Synthase Reaction for Anaerobic Toluene Activation Based on Structural Studies of the ProductHarry R. Beller, Alfred M. Spormann — 1998
• Genetic and Transcriptional Analyses of theVibrio cholerae Mannose-Sensitive Hemagglutinin Type 4 Pilus Gene LocusJane W. Marsh, Ronald K. Taylor — 1999
• Anaerobic benzene oxidation coupled to nitrate reduction in pure culture by two strains of DechloromonasJohn D. Coates, Romy Chakraborty, Joseph G. Lack — 2001
• Inorganic polyphosphate supports resistance and survival of stationary-phase Escherichia coliN. N. Rao, A Kornberg — 1996
• Nucleotide sequences and genetic analysis of hydrogen oxidation (hox) genes in Azotobacter vinelandiiAngeli Lal Menon, Leonard E. Mortenson, R L Robson — 1992
• Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristicDaniel H. Haft, Ian T. Paulsen, Naomi Ward — 2006
• Roles of HoxX and HoxA in biosynthesis of hydrogenase in Bradyrhizobium japonicumMeredith C. Durmowicz, Robert J. Maier — 1997
• The nasB operon and nasA gene are required for nitrate/nitrite assimilation in Bacillus subtilisK. Ogawa, Eiji Akagawa, Keisaku Yamane — 1995
• Structure and function of a periplasmic nitrate reductase in Alcaligenes eutrophus H16Roman A. Siddiqui, Ute Warnecke‐Eberz, A Hengsberger — 1993
• Genetic organization and characteristics of the 3-(3-hydroxyphenyl)propionic acid degradation pathway of Comamonas testosteroni TA441.Hiroyuki Arai, Toshiaki Kudo, Takako Yamamoto — 1999

Cited by

• Anaerobic Degradation of Benzene and Polycyclic Aromatic Hydrocarbons広康 小倉, 康道 坂口, 一彦 岩佐 — 2016
• Anaerobic microbial degradation of organic pollutants with chlorate as electron acceptorFarrakh Mehboob — 2010
• Community ecology and Sirex noctilio: Interactions with microbial symbionts and native insectsBrian M. Thompson — 2013
• Geobiotechnology II: Energy Resources, Subsurface Technologies, Organic Pollutants and Mining Legal PrinciplesAxel Schippers, F. Glombitza, W. Sand — 2014
• The key microorganisms for anaerobic degradation of pentachlorophenol in paddy soil as revealed by stable isotope probing.Hui Tong, Chengshuai Liu, Fangbai Li — 2015
• Identification of enzymes involved in anaerobic benzene degradation by a strictly anaerobic iron-reducing enrichment culture.Nidal Abu Laban, Draženka Selesi, Thomas Rattei — 2010
• Strategies for effective bioremediation of water co-contaminated with 1, 2-dichloroethane and heavy metals.Ashmita Arjoon — 2011
• The first metagenome of activated sludge from full-scale anaerobic/anoxic/oxic (A2O) nitrogen and phosphorus removal reactor using Illumina sequencing.Mei Tian, Fangqing Zhao, Xin Shen — 2015
• Propane biostimulation in biologically activated carbon (BAC) selects for bacterial clades adept at degrading persistent water pollutants.Kristin M. Mikkelson, Carissa L. Homme, Dong Li — 2015
• Study of the TmoS/TmoT two‐component system: towards the functional characterization of the family of TodS/TodT like systemsHortencia Silva‐Jiménez, Cristina García‐Fontana, Bilge Hilal Çadırcı — 2012
• Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47.Franz D. Bergmann, Draženka Selesi, Thomas Weinmaier — 2011
• Abundance and Diversity of Bacteria in Oxygen Minimum Drinking Water Reservoir Sediments Studied by Quantitative PCR and PyrosequencingHaihan Zhang, Tinglin Huang, Sheng-nan Chen — 2014
• Anaerobic degradation of non-substituted aromatic hydrocarbons.Rainer U. Meckenstock, Housna Mouttaki — 2011
• Bacterial oxygen production in the darkKatharina F. Ettwig, Daan R. Speth, Joachim Reimann — 2012
• Application of a long-lasting colloidal substrate with pH and hydrogen sulfide control capabilities to remediate TCE-contaminated groundwater.Yih‐Terng Sheu, S.C. Chen, Chih‐Ching Chien — 2015
• Study on anaerobic ammonium oxidation process coupled with denitrification microbial fuel cells (MFCs) and its microbial community analysis.Chao Li, Hongqiang Ren, Ming Xu — 2015
• Neutrophilic, nitrate-dependent, Fe(II) oxidation by a Dechloromonas speciesAnirban Chakraborty, Flynn W. Picardal — 2013
• New Hydrocarbon Degradation Pathways in the Microbial Metagenome from Brazilian Petroleum ReservoirsIsabel N. Sierra-García, J. Alvarez, Suzan Pantaroto de Vasconcellos — 2014
• An Uncultivated Nitrate-Reducing Member of the Genus Herminiimonas Degrades TolueneSo‐Jeong Kim, Soo-Je Park, Man‐Young Jung — 2014
• Analysis of Hydrocarbon-Contaminated Groundwater Metagenomes as Revealed by High-Throughput SequencingNathlee Abbai, Balakrishna Pillay — 2013

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