Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

Keywords

Biology, Alternative splicing, RNA splicing, Exon, splice

References

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• Understanding alternative splicing: towards a cellular codeArianne J. Matlin, Francis Clark, Christopher W. J. Smith — 2005
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• Assessing the number of ancestral alternatively spliced exons in the human genomeRotem Sorek, Gideon Dror, Ron Shamir — 2006
• Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approachMatthew N. Bainbridge, Robin M. Warren, Martin Hirst — 2006
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• Variation in alternative splicing across human tissuesG Yeo, Dirk Holste, Gabriel Kreiman — 2004
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• Categorical Data AnalysisJeremy Freese, Jason Beckfield — 2003

Cited by

• Genome-wide Characterization of RNA Expression and ProcessingAmmar Zaghlool — 2013
• Expression and functions of the star proteins Sam68 and T-STAR in mammalian spermatogenesis.Ingrid Ehrmann, David J. Elliott — 2010
• Designing, performing, and interpreting a microarray-based gene expression study.Giovanni Coppola — 2011
• Alternative splicing of tumor suppressors and oncogenes.Claudia Ghigna, Silvano Riva, Giuseppe Biamonti — 2013
• Cancer-associated regulation of alternative splicingS.A. Bradley, Charlotte Griffin — 2009
• Stoichiometry of a regulatory splicing complex revealed by single-molecule analysesDrissa Ouattara — 2010
• Alternative Splicing of SLC39A14 in Colorectal Cancer is Regulated by the Wnt Pathway*Peter West, Christina L. Brown — 2010
• FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing dataEmily Achieng’ Akuno — 2010
• Genetics of Gene Expression in CNSAshutosh K. Pandey, Robert W. Williams — 2014
• Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samplesMunawarah Munawarah — 2011
• Functional analysis of BBS3 A89V that results in non-syndromic retinal degenerationCarmen Méndez Zubiría — 2011
• Alternative splicing variants of human arsenic (+3 oxidation state) methyltransferase.Matthew Blaine Jaskson — 2011
• The cyclin L homolog MOS12 and the MOS4-associated complex are required for the proper splicing of plant resistance genes.Adam Chrzanowski, J. S. Robins, W. J. Trevor Greening — 2012
• A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysisMichel Vaïs — 2013
• Genome-wide activation of latent donor splice sites in stress and diseaseJosé Manuel Melchor Monserrat, Josep Benedito Nuez — 2012
• Molecular Physiology of SPAK and OSR1: Two Ste20-Related Protein Kinases Regulating Ion Transport浩樹 南, 豊 金子, 真也 竹内 — 2012
• Genomic analysis reveals novel connections between alternative splicing and circadian regulatory networks.文彬 浅川, 宏 高橋 — 2013
• Role of miRNAs in CD4 T cell plasticity during inflammation and toleranceMax Crouau — 2013
• DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq dataCraig Wright, Denis Burke — 2013
• Signaling from depolarization to alternative splicing: Identification of molecular links mediating inducible exon skippingPing Zhang — 2011

Related papers

• Alternative splice variants encoding unstable protein domains exist in the human brain.Keiichi Homma, Reiko Kikuno, Takahiro Nagase — 2004
• EST comparison indicates 38% of human mRNAs contain possible alternative splice formsDavid Brett, Jens Hanke, Gerrit Lehmann — 2000
• Detection of Novel Splice Forms in Human and Mouse Using Cross-Species ApproachZhengyan Kan, John C. Castle, Jason M. Johnson — 2003
• TAPAS: tools to assist the targeted protein quantification of human alternative splice variantsJae‐Seong Yang, Eduard Sabidó, Luís Serrano — 2014
• Isolation, expression and analysis of splice variants of a human Ca2+/calmodulin-stimulated phosphodiesterase (PDE1A).Peter B. Snyder, Vincent A. Florio, K M Ferguson — 1999
• Genome-wide detection of tissue-specific alternative splicing in the human transcriptome.Qiang Xu — 2002
• The impact of splice isoforms on voltage‐gated calcium channel α1 subunitsKarin Jurkat‐Rott, Frank Lehmann‐Horn — 2004
• Alternative splice site selection in the human growth hormone gene transcript and synthesis of the 20 kDa isoform: role of higher order transcript structurePA Estes, Margrit Urbanek, Jharna Ray — 1994
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• Alternative mRNA splicing: the Shaker gene.J G Sutcliffe, Robert J. Milner — 1988