PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database.

Keywords

Biology, Oligonucleotide, Computational biology, Ribosomal RNA, Phylogenetic tree

References

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• Algorithms and Software for PCR Primer DesignYu‐Ting Huang — 2015
• Detecting unknown sequences with DNA microarrays: explorative probe design strategies.Éric Dugat‐Bony, Eric Peyretaillade, Nicolas Parisot — 2012
• An investigation into the potential impacts of ocean acidification and ocean fertilisation on the genetic diversity of marine bacterial assemblagesJohn Woolven-Allen — 2008
• Aerobe Deproteinierung von Crustaceaen-Abfällen zur Gewinnung von Chitin mittels proteolytischer MikroorganismenGabriele Daum — 2006
• Ribosomal tag pyrosequencing of DNA and RNA from benthic coral reef microbiota: community spatial structure, rare members and nitrogen-cycling guilds.Eric Gaidos, Antje Rusch, Melissa Ilardo — 2011
• probeCheck – a central resource for evaluating oligonucleotide probe coverage and specificityAlexander Loy, Roland Arnold, Patrick Tischler — 2008
• Non-target sites with single nucleotide insertions or deletions are frequently found in 16S rRNA sequences and can lead to false positives in fluorescence in situ hybridization (FISH).Simon Jon McIlroy, Daniel Tillett, Steve Petrovski — 2011
• Identification of signature and primers specific to genus Pseudomonas using mismatched patterns of 16S rDNA sequencesHJ Purohit, DV Raje, Atya Kapley — 2003
• Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria, and a proposal of a novel bacterial phylum Ignavibacteriae.Olga A. Podosokorskaya, Vitaly V. Kadnikov, Sergey N. Gavrilov — 2013

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