Observation of the A-DNA to B-DNA transition during unrestrained molecular dynamics in aqueous solution.

Keywords

Molecular dynamics, DNA, Crystallography, Chemistry, Aqueous solution

References

No references recorded for this paper.

Cited by

• An NMR study of d(CTACTGCTTTAG).d(CTAAAGCAGTAG) showing hydration water molecules in the minor groove of a TpA step.Ted Benton — 1998
• Molecular modeling of drug-DNA complexes: an update.John O. Trent — 2001
• Restrained molecular dynamics of solvated duplex DNA using the particle mesh Ewald methodDavid E. Konerding, Thomas E. Cheatham, Peter A. Kollman — 1999
• Computational study of DNA in non-canonical environmentA. Arcella — 2014
• Comparison of protein solution structures refined by molecular dynamics simulation in vacuum, with a generalized Born model, and with explicit waterBin Xia, Vickie Tsui, David A. Case — 2002
• Theoretical and Computational Strategies for the Study of the Molecular Imprinting Process and Polymer Performance.Ian A. Nicholls, Swapnil Chavan, Kerstin Golker — 2015
• Heat conductivity of DNA double helixA. V. Savin, M. A. Mazo, Irina P. Kikot — 2010
• Computational tools for modeling and measuring chromosome structureBrian C. Ross — 2012
• Modelling ion binding to AA platform motifs in RNA: a continuum solvent study including conformational adaptation.Carmen Burkhardt, Martin Zacharias — 2001
• Reversible B/A Transitions in Single DNA Molecule Immersed in A Water DropAlexey K. Mazur — 2003
• Molecular Modeling of Nucleic Acid Structure: Setup and AnalysisThomas E. Cheatham, Bernard R. Brooks, Peter A. Kollman — 2001
• The structure of a stable intermediate in the A B DNA helix transition.Ho Leung Ng, Mary L. Kopka, Richard E. Dickerson — 2000
• Charge transfer in DNA. Sensitivity of electronic couplings to conformational changesAlexander A. Voityuk, Khatcharin Siriwong, Notker Rösch — 2001
• Molecular dynamics simulation of nucleic acids.Thomas E. Cheatham, Peter A. Kollman — 2000
• Sequence-dependent conformational perturbation in DNA duplexes containing an epsilonA.T mismatch using molecular dynamics simulation.Anton B. Guliaev, János Sági, B. Singer — 2000
• Inherent DNA curvature and flexibility correlate with TATA box functionality.Osmar Norberto de Souza, Rick L. Ornstein — 1998
• Hydration dynamics of oriented DNA films investigated by time-domain terahertz spectroscopyC. Kistner, A. André, T. Fischer — 2007
• Simulations of the molecular dynamics of nucleic acids.Pascal Auffinger, Éric Westhof — 1998
• Aromatic Base Stacking in DNA: From ab initio Calculations to Molecular Dynamics SimulationsJiřı́ Šponer, Imre Berger, Nad’a Špačková — 2000
• Molecular dynamics simulations of the d(CCAACGTTGG)(2) decamer: influence of the crystal environment.David R. Bevan, Leping Li, Lee G. Pedersen — 2000

Related papers

• Variations of coefficients in the Angstrom formula in JapanHiroyuki Matsui, Tomoyasu ISHIDA — 2004
• A study of some new absorption bands of SrH and SrD in the ultra-violet regionM Aslam Khan, M R Butt — 1968
• A high dispersion study of some new absorption bands of CaH and CaD in the ultra-violet regionM Aslam Khan, M. K. Afridi — 1968
• Band spectra of the singlet systems of the TiO moleculeC. Linton, R. W. Nicholls — 1969
• Crystal structure of 1,2-bis(4-pyridyl)-glycol, C24H24N4O4Jian Li, Dongsheng Li, Feng Fu — 2007
• Structure of hexaaquadichloroyttrium(III) chlorideA.M.T. Bell, A. J. Smith — 1990
• Anders Jonas ÅngströmDaniel Ribeiro — 2015