Ab initio protein structure prediction of CASP III targets using ROSETTA
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Summary
Results suggest that ab initio methods may soon become useful for low‐resolution structure prediction for proteins that lack a close homologue of known structure.
- Type
- article
- Published
- 1999-01-01
- Cited by
- 597
- References
- 16
- OpenAlex
- https://openalex.org/W1989415425
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:5774447
Keywords
CASP, Protein structure prediction, Ab initio, Computational biology, Protein structure
References
- Surprising similarities in structure comparison.
- Prediction of protein secondary structure at better than 70% accuracy.
- Clustering of low-energy conformations near the native structures of small proteins.
- Dali: a network tool for protein structure comparison.
- A program to produce both detailed and schematic plots of protein structures
- NMR structure of the N-terminal domain of E. coli DnaB helicase: implications for structure rearrangements in the helicase hexamer.
- Raster3D: photorealistic molecular graphics.
- Improved recognition of native‐like protein structures using a combination of sequence‐dependent and sequence‐independent features of proteins
- Numerical criteria for the evaluation of ab initio predictions of protein structure
- Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.
- A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator.
- Structure and Asn-Pro-Phe binding pocket of the Eps15 homology domain.
- Protein fold recognition using sequence‐derived predictions
- NMR Structure of the N-Terminal Domain of E. Coli Dnab Helicase
Cited by
- A study of fragment-based protein structure prediction: biased fragment replacement for searching low-energy conformation.
- A physical approach to protein structure prediction.
- Improved recognition of native-like protein structures using a family of designed sequences
- Molecular dynamics in the endgame of protein structure prediction.
- Protein refolding in silico with atom-based statistical potentials and conformational search using a simple genetic algorithm.
- The Evaluation of Protein Structure Prediction Results
- Scoring functions for de novo protein structure prediction revisited.
- Characterization and Prediction of Protein Flexibility Based on Structural Alphabets
- Protein folding and macromolecular dynamics: Fundamental limits of length and time scales
- Modulation of the kynurine pathway of tryptophan metabolism in search for neuroprotective agents. Focus on kynurenine-3-hydroxylase.
- Inferring evolution of fish proteins: the globin case study.
- Early Folding Biases in the Folding Free-Energy Surface of βα-Repeat Proteins: A Dissertation
- The assessment of methods for protein structure prediction.
- A Study of Remote Homology Detection
- Protein structure modeling with MODELLER.
- Characterization of RPE65 and RDH12, two enzymes associated with retinal dystrophy and retinoid processing
- Optimal length of fragments for use in protein structure prediction
- Protein Folding in CLP(FD) with Empirical Contact Energies
- Structural basis of caspase-3 substrate specificity revealed by crystallography, enzyme kinetics, and computational modeling
- A new paradigm for the folding of ribonucleic acids
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