Synonymous and Nonsynonymous Substitutions in Mammalian Genes: Intragenic Correlations

Keywords

Nonsynonymous substitution, Biology, Synonymous substitution, Gene, Genetics

References

• Molecular Evolutionary GeneticsMasatoshi Nei — 1987
• CORRELATION BETWEEN SYNONYMOUS AND NONSYNONYMOUS SUBSTITUTIONSYasuo Ina — 1995
• Fundamentals of molecular evolutionDavid P. Mindell — 1991
• Fundamentals of molecular evolutionDan Graur, Wen‐Hsiung Li, Jpj Brakenhoff — 1990
• Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.M Nei, T Gojobori — 1986
• Mutation rates differ among regions of the mammalian genomeKenneth H. Wolfe, Paul M. Sharp, Wen‐Hsiung Li — 1989
• Recent development of the neutral theory viewed from the Wrightian tradition of theoretical population genetics.Makoto Kimura — 1991
• Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.Hiroshi Akashi — 1994
• Atlas of protein sequence and structureMin-Yen Chang, M. O. Dayhoff, Richard V. Eck — 1965

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• Isochores and the evolutionary genomics of vertebrates.Miguel Á. Ariño, Pablo Maella — 2000
• Local effects of limited recombination in DrosophilaAnna Williford, Bryant McAllister, John Manak — 2010
• Gene Expression, Amino Acid Conservation, and Hydrophobicity Are the Main Factors Shaping Codon Preferences in Mycobacterium tuberculosis and Mycobacterium lepraeAntônio Basílio de Miranda, Fernando Álvarez-Valín, Kamel Jabbari — 2000
• The genome organization of angiosperms.Nicolas Carels, S. G. Pandalai — 2005
• The effect of tandem substitutions on the correlation between synonymous and nonsynonymous rates in rodents.Nick G.C. Smith, Laurence D. Hurst — 1999
• Rates of nucleotide substitution and mammalian nuclear gene evolution. Approximate and maximum-likelihood methods lead to different conclusions.Joseph P. Bielawski, Katherine A. Dunn, Ziheng Yang — 2000
• Isochore evolution in mammals: a human-like ancestral structure.Nicolas Galtier, Dominique Mouchiroud — 1998
• Molecular adaptation of alanine:glyoxylate aminotransferase targeting in primates.Joanna D. Holbrook, Graeme M. Birdsey, Ziheng Yang — 2000
• Inaccurate reconstruction of ancestral GC levels creates a "vanishing isochores" effect.Fernando Álvarez-Valín, Oliver Clay, Stéphane Cruveiller — 2004
• Male-Driven Evolution Among Eoaves? A Test of the Replicative Division Hypothesis in a Heterogametic Female (ZW) SystemNate W. Kahn, Tom W. Quinn — 1999
• Intron Length and Codon UsageAlexander E. Vinogradov — 2001
• Synonymous and Nonsynonymous Substitutions in Genes from Gramineae: Intragenic CorrelationsFernando Álvarez-Valín, Kamel Jabbari, Nicolas Carels — 1999
• A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate.Gerald J. Wyckoff, Christine M. Malcom, Eric J. Vallender — 2005
• Cytonuclear disequilibria in wild populations of rabbit (Oryctolagus cuniculus L.) suggest unequal allele turnover rates at the b locus (IGKC1)Wessel van der Loo, Florence Mougel, M.S. Sánchez — 1999
• Mutation is modulated: implications for evolution.Lynn Helena Caporale — 2000
• Compositional Properties of Homologous Coding Sequences from PlantsNicolas Carels, Pascal Hatey, Kamel Jabbari — 1998
• Enhanced Synonymous Site Divergence in Positively Selected VertebrateAntimicrobial Peptide GenesJacob A. Tennessen — 2005
• Silent mutations in the gene encoding the p53 protein are preferentially located in conserved amino acid positions and splicing enhancers.Guillermo Lamolle, Mónica Marı́n, Fernando Álvarez-Valín — 2006
• Performance of likelihood ratio tests of evolutionary hypotheses under inadequate substitution models.J. Zhang — 1999
• Variation in synonymous substitution rates among mammalian genes and the correlation between synonymous and nonsynonymous divergencesTomoko Ohta, Yasuo Ina — 1995

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