MINT: a Molecular INTeraction database

Summary

MINT, a database designed to store data on functional interactions between proteins, consists of entries extracted from the scientific literature by expert curators assisted by ‘MINT Assistant’, a software that targets abstracts containing interaction information and presents them to the curator in a user‐friendly format.

Keywords

Computer science, Protein–protein interaction, Database, Interaction information, Information retrieval

References

Physiological modeling with virtual cell framework.James C. Schaff, Boris M. Slepchenko, Leslie M. Loew — 2000
High-throughput screening for protein-protein interactions using two-hybrid assay.Gerard Cagney, Peter Uetz, Stanley Fields — 2000
A protein linkage map of Escherichia coli bacteriophage T7Paul L. Bartel, Jennifer A. Roecklein, Dhruba J. SenGupta — 1996
Automatic extraction of keywords from scientific text: application to the knowledge domain of protein familiesMiguel A. Andrade‐Navarro, Alfonso Valencia — 1998
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000Amos Bairoch, Rolf Apweiler — 2000
Postgenomic protein analysis: The next bend in the riverAndrew R. Mendelsohn, Roger Brent — 1998
A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiaePeter Uetz, Loïc Giot, Gerard Cagney — 2000
Mining literature for protein-protein interactionsEdward M. Marcotte, Ioannis Xénarios, David Eisenberg — 2001
Genome-wide analysis of vaccinia virus protein-protein interactions.Stephen McCraith, Ted Holtzman, Bernard Moss — 2000
Functional genomics by mass spectrometryJens Andersen, Matthias Mann — 2000
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins.Takashi Ito, Kosuke Tashiro, Shigeru Muta — 2000
A comprehensive two-hybrid analysis to explore the yeast protein interactomeTakashi Ito, Tomoko Chiba, Ritsuko Ozawa — 2001
BIND: THE BIOMOLECULAR INTERACTION DATABASEGary D. Bader, Ian Donaldson, Cheryl Wolting — 2001
FEBS LettMatti Saraste, Giorgio Semenza — 2000

Cited by

Searching the protein interaction space through the MINT database.Andrew Chatr‐aryamontri, Andreas Zanzoni, Arnaud Céol — 2008
Prediction of human protein–protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalkAristidis Diamantis, Emmanouil Magiorkinis, Helen Koutselini — 2011
Augmented transitive relationships with high impact protein distillation in protein interaction prediction.José Alfredo Vicente Orellana, Eliana Linares Perea, Carmen Fernández de Castro — 2012
Unbiased label-free quantitative proteomic profiling and enriched proteomic pathways in seminal plasma of adult men before and after varicocelectomy.Mariana Camargo, Paula Intasqui Lopes, P.T. Del Giudice — 2013
A guide to CORNET for the construction of coexpression and protein-protein interaction networks.Stefanie De Bodt, Dirk Inzé — 2013
Network cluster analysis of protein–protein interaction network identified biomarker for early onset colorectal cancerRaúl Mercadal Orfila — 2013
The evolution of protein interaction networks.Andreas Schüler, Erich Bornberg‐Bauer — 2011
Multiplexed Isobaric Tagging Protocols for Quantitative Mass Spectrometry Approaches to Auditory ResearchDouglas E. Vetter, Johnvesly Basappa, Şevin Turcan — 2009
Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology.Thottethodi Subrahmanya Keshava Prasad, Kumaran Kandasamy, Akhilesh Pandey — 2009
Inference of Synechocystis protein interaction networkMagali Michaut, Samuel Kerrien, Luisa Montecchi‐Palazzi — 2008
Computational methods for predicting protein-protein interactions.Sylvain Pitre, Md Alamgir, James R. Green — 2008
Structural and relational data mining for systems biology applicationsElisabeth Georgii — 2010
Heterogeneous biological network visualization system: case study in context of medical image data.Erno Lindfors, Jussi Mattila, Peddinti Gopalacharyulu — 2012
Initial Results on Knowledge Discovery and Decision Support for Intracranial AneurysmsChristoph M. Friedrich, Martin Hofmann‐Apitius, Robert Dunlop — 2016
Connecting Seed Lists of Mammalian Proteins Using Steiner TreesAmelia White, Avi Ma’ayan — 2007
Elucidation of the Cardiac Myogenesis Regulatory NetworkJay H. Konieczka — 2008
Inference and validation of Synechocystis protein interaction network using orthologyMagali Michaut, Samuel Kerrien, Luisa Montecchi‐Palazzi — 2007
Exploring the function and evolution of proteins using domain familiesAdam J. Reid — 2009
Reverse Chemical GeneticsHisashi Koga — 2009
Data Mining in ProteomicsMichael Hamacher, Martin Eisenacher, Christoph Stephan — 2011

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