The elusive yeast interactome

Keywords

Interactome, Yeast, Computational biology, Saccharomyces cerevisiae, Simple (philosophy)

References

• Mass spectrometry-based proteomicsH. Pat Artis — 2003
• Global analysis of protein phosphorylation in yeastJason Ptacek, Geeta Devgan, Gregory A. Michaud — 2005
• A novel genetic system to detect protein–protein interactionsStanley Fields, Ok-Kyu Song — 1989
• Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryYuen Ho, Albrecht Gruhler, Adrian Heilbut — 2002
• Proteome survey reveals modularity of the yeast cell machineryAnne‐Claude Gavin, Patrick Aloy, Paola Grandi — 2006
• A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiaePeter Uetz, Loïc Giot, Gerard Cagney — 2000
• A quantitative protein interaction network for the ErbB receptors using protein microarraysRichard B. Jones, Andrew Gordus, Jordan A. Krall — 2006
• Functional organization of the yeast proteome by systematic analysis of protein complexesAnne‐Claude Gavin, Markus Bösche, Roland Krause — 2002
• The third dimension for protein interactions and complexes.Patrick Aloy, Robert B. Russell — 2002
• The spindle pole body component Spc97p interacts with the γ‐tubulin of Saccharomyces cerevisiae and functions in microtubule organization and spindle pole body duplicationMichael Knop, Gislene Pereira, Silke Geissler — 1997
• A critical and Integrated View of the Yeast InteractomeMichael Cornell, Norman W. Paton, Stephen G. Oliver — 2004
• Global landscape of protein complexes in the yeast Saccharomyces cerevisiaeNevan J. Krogan, Gerard Cagney, Haiyuan Yu — 2006
• The interactome of human EGF/ErbB receptorsPeter Uetz, Igor Štagljar — 2006
• Spc98p and Spc97p of the yeast γ‐tubulin complex mediate binding to the spindle pole body via their interaction with Spc110pMichael Knop, Elmar Schiebel — 1997
• The Yeast Spindle Pole Body Component Spc72p Interacts with Stu2p and Is Required for Proper Microtubule AssemblyXiaoyue Peter Chen, Hongwei Yin, Tim C. Huffaker — 1998
• A comprehensive two-hybrid analysis to explore the yeast protein interactomeTakashi Ito, Tomoko Chiba, Ritsuko Ozawa — 2001
• The TAP ProjectCarlo Spinelli, Furio Marchersani — 2005
• Global Analysis of Protein Activities Using Proteome ChipsHeng Zhu, Metin Bilgin, Rhonda Bangham — 2001

Cited by

• Network approaches to the functional analysis of microbial proteins.J.S. Hallinan, Katherine James, Anil Wipat — 2011
• Genome Mapping and Genomics in Laboratory AnimalsPaul Denny — 2012
• Knowledge derivation and data mining strategies for probabilistic functional integrated networksKatherine James — 2012
• Determining protein interaction specificity of native and designed bZIP family transcription factorsA. Reinke — 2012
• A structural classification of protein-protein interactions for detection of convergently evolved motifs and for prediction of protein binding sites on sequence levelAndreas Henschel — 2008
• Identificazione di complessi proteici coinvolti in specifici processi cellulariMarianna Cozzolino — 2010
• Novel approaches to the integration and analysis of systems biology dataFidel Ramírez — 2011
• Computational and experimental methods in functional genomics : the good, the bad, and the ugly of systems biologyGlen Traver Hart — 2008
• Coupling protein complex analysis to peptide based proteomics.Qiang Gao, Ashraf G. Madian, Xiuping Liu — 2010
• Proteomic analysis of protein complexesMing Zhou, Timothy D. Veenstra — 2007
• Quantitative maps of genetic interactions in yeast - Comparative evaluation and integrative analysisRolf Lindén, Ville-Pekka Eronen, Tero Aittokallio — 2011
• Computational analysis of human protein interaction networksFidel Ramírez, Andreas Schlicker, Yassen Assenov — 2007
• Protein-protein interactions: from global to local analyses.W Kelly, MPH Stumpf — 2008
• Retention of protein complex membership by ancient duplicated gene products in budding yeast.Gabriel Musso, Zhaolei Zhang, Andrew Emili — 2007
• An optimized predictive strategy for interactome mapping.Martin J. Aryee, John Quackenbush — 2008
• The Binary Protein Interactome of Treponema pallidum – The Syphilis SpirocheteBjoern Titz, Seesandra V. Rajagopala, Johannes B. Goll — 2008
• Extracting high confidence protein interactions from affinity purification data: at the crossroads.Shuye Pu, James Vlasblom, Andrei L. Turinsky — 2015
• Diversity in Genetic In Vivo Methods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase SystemBram Stynen, Hélène Tournu, Jan Tavernier — 2012
• Plant proteomics: concepts, applications, and novel strategies for data interpretation.Sacha Baginsky — 2009
• SPINE: A method for the rapid detection and analysis of protein–protein interactions in vivoChristina Herzberg, Lope Andrés Flórez Weidinger, Bastian Dörrbecker — 2007

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