K2D2: Estimation of protein secondary structure from circular dichroism spectra
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Summary
K2D2 is developed, a method with an associated web server to estimate protein secondary structure from circular dichroism spectra and outputs the estimated secondary structure content of the corresponding protein, as well as an estimated measure of error.
- Type
- article
- Published
- 2008-05-13
- Cited by
- 454
- References
- 23
- Access
- Open access
- OpenAlex
- https://openalex.org/W1978592925
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:264795888
Keywords
Circular dichroism, Protein secondary structure, Protein tertiary structure, Protein structure, Chemistry
References
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- Variable selection method improves the prediction of protein secondary structure from circular dichroism spectra.
- SOMCD: Method for evaluating protein secondary structure from UV circular dichroism spectra
- Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network.
- Circular dichroic analysis of protein conformation: inclusion of the beta-turns.
- Information content in the circular dichroism of proteins.
- Estimation of globular protein secondary structure from circular dichroism.
- Analyzing protein circular dichroism spectra for accurate secondary structures
- The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data
- A reference database for circular dichroism spectroscopy covering fold and secondary structure space
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- Biophysics and protein engineering with noncanonical amino acids
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- The development and current state of protein circular dichroism
- Enhanced antimicrobial activity of novel synthetic peptides derived from vejovine and hadrurin.
- In vitro drug metabolism by C-terminally truncated human flavin-containing monooxygenase 3.
- Identification of Human Proteins That Modify Misfolding and Proteotoxicity of Pathogenic Ataxin-1
- Structure-Function of Cyanobacterial Outer-Membrane Protein, Slr1270: Homolog of E. coli Drug Export/ Colicin Import Protein, TolC
- Reversible conformational change of cytochrome c at a modified gold electrode in methanol.
- Hydration dynamics at fluorinated protein surfaces
- Prediction of protein secondary structure from circular dichroism using theoretically derived spectra
- Interactions of Quinolinols, Peptides and SNAP-25 with the Protease Domain of Botulinum Neurotoxin A
- Dynamics of an active-site flap contributes to catalysis in a JAMM family metallo deubiquitinase
- Biophysical characterization of soluble Pseudomonas syringae ice nucleation protein InaZ fragments.
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- Spectroscopic and computational evaluation on the binding of safranal with human serum albumin: Role of inner filter effect in fluorescence spectral correction.
- Chemical Lipophilization of Bovine α-Lactalbumin with Saturated Fatty Acyl Residues: Effect on Structure and Functional Properties.
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