Repeat elements and the Arabidopsis DNA methylation landscape
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Summary
It is argued that paramutation, an epigenetic phenomenon first described in maize, is an extreme manifestation of this RNAi-dependent pathway and in particular the role of RNAi in the incremental methylation and silencing of repeat elements over successive generations.
- Type
- review
- Published
- 2010-05-12
- Cited by
- 89
- References
- 115
- Access
- Open access
- OpenAlex
- https://openalex.org/W1977588103
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:27773871
Keywords
Biology, DNA methylation, Epigenetics, Genetics, RNA-Directed DNA Methylation
References
- Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis.
- Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
- X inactivation, differentiation, and DNA methylation.
- Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
- Maintenance of genomic methylation requires a SWI2/SNF2-like protein
- Extensive Demethylation of Repetitive Elements During Seed Development Underlies Gene Imprinting
- Paramutation: epigenetic instructions passed across generations.
- A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis.
- Epigenetic inheritance in plants
- Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
- Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by Aid deficiency
- Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading.
- Genome-Wide Profiling and Analysis of Arabidopsis siRNAs
- Three SRA-Domain Methylcytosine-Binding Proteins Cooperate to Maintain Global CpG Methylation and Epigenetic Silencing in Arabidopsis
- Paternal Control of Embryonic Patterning in Arabidopsis thaliana
- Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation
- The Role of DNA Methylation in Invertebrates: Developmental Regulation or Genome Defense?
- Gene number, noise reduction and biological complexity.
- Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.
- A Role for RNAi in the Selective Correction of DNA Methylation Defects
Cited by
- Etude du contrôle des éléments transposables par la méthylation de l’ADN chez Arabidopsis thaliana
- Modèles à variables latentes pour des données issues de tiling arrays. Applications aux expériences de ChIP-chip et de transcriptome
- A bioinformatics analysis of the arabidopsis thaliana epigenome. (Une analyse bioinformatique de l'Epigénome d'Arabidopsis thaliana)
- Determining the Roles that DICER1 and Noncoding RNAs Play in Endometrial Tumorigenesis
- A study of endogenous transposon activity in grapevine (Vitis vinifera L.)
- Initiation of seed coat development is controlled by polycomb group proteins and requires a signal from the sexual endosperm
- Extensive Natural Epigenetic Variation at a De Novo Originated Gene
- Citrus somatic hybrid: an alternative system to study rapid structural and epigenetic reorganization in allotetraploid genomes
- Ten years of genetics and genomics: what have we achieved and where are we heading?
- Paramutation: a process for acquiring trans-generational regulatory states.
- The maize b1 paramutation control region causes epigenetic silencing in Drosophila melanogaster
- Stemming Epigenetics in Marine Stramenopiles
- Variation in Genomic Methylation in Natural Populations of Chinese White Poplar
- DNA methylation reprogramming during plant sexual reproduction?
- Epigenetic profiling of heterochromatic satellite DNA
- Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae
- Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor
- Cytosine Methylation of an Ancient Satellite Family in the Wild Beet Beta procumbens
- Epigenetics and the environment: emerging patterns and implications
- Can ENCODE tell us how much junk DNA we carry in our genome?
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