Defining the core Arabidopsis thaliana root microbiome
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Summary
The pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana plants is reported to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of plants grown under controlled conditions in natural soils are sufficiently dependent on the host to remain consistent across different soil types and developmental stages.
- Type
- article
- Published
- 2012-08-01
- Cited by
- 2,534
- References
- 37
- OpenAlex
- https://openalex.org/W1973831267
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:4413727
Keywords
Rhizosphere, Biology, Actinobacteria, Proteobacteria, Arabidopsis thaliana
References
- Unravelling the effects of the environment and host genotype on the gut microbiome
- Nucleic acid techniques in bacterial systematics
- Experimental factors affecting PCR-based estimates of microbial species richness and evenness
- Microbial root endophytes
- Bacterial conjugation between pseudomonads in the rhizosphere of wheat
- Effects of Plant Genotype and Growth Stage on the Betaproteobacterial Communities Associated with Different Potato Cultivars in Two Fields
- Characterization of the sink/source transition in tobacco (Nicotiana tabacum L.) shoots in relation to nitrogen management and leaf senescence
- Root-induced changes in the rhizosphere: Importance for the mineral nutrition of plants
- Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering
- Plant immunity: towards an integrated view of plant–pathogen interactions
- probeBase—an online resource for rRNA-targeted oligonucleotide probes: new features 2007
- Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
- Natural variation in the regulation of leaf senescence and relation to other traits in Arabidopsis
- Enterotypes of the human gut microbiome
- Bioactive secondary metabolites produced by microorganisms associated with plants
- Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARD-FISH)
- QIIME allows analysis of high-throughput community sequencing data
- Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
- Comparative Analysis of Bacterial Communities in a Potato Field as Determined by Pyrosequencing
- The ecology of the phyllosphere: geographic and phylogenetic variability in the distribution of bacteria on tree leaves
Cited by
- Bacterial Diversity in the Rhizosphere of Cucumbers Grown in Soils Covering a Wide Range of Cucumber Cropping Histories and Environmental Conditions
- The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application.
- Chitin Mixed in Potting Soil Alters Lettuce Growth, the Survival of Zoonotic Bacteria on the Leaves and Associated Rhizosphere Microbiology
- Emergence of plant and rhizospheric microbiota as stable interactomes
- Bacterial rhizoplane colonization patterns of Buchloe dactyloides growing in metalliferous mine tailings reflect plant status and biogeochemical conditions
- A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization
- Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
- Ethylene induced plant stress tolerance by Enterobacter sp. SA187 is mediated by 2‐keto‐4‐methylthiobutyric acid production
- Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
- Enhancing photosynthesis in plants: the light reactions
- Structure and Function of Rhizosphere Soil and Root Endophytic Microbial Communities Associated With Root Rot of Panax notoginseng
- Lateral root enriched Massilia associated with plant flowering in maize
- Community coalescence and plant host filtering determine the spread of tetracycline resistance genes from pig manure into the microbiome continuum of the soil-plant system.
- Manipulation of the plant microbiome : antimicrobial peptide expression in nicotiana attenuata
- VALIDATING APPROACHES FOR STUDYING MICROBIAL DIVERSITY TO CHARACTERIZE COMMUNITIES FROM ROOTS OF Populus deltoides
- Methylotrophs in natural habitats: current insights through metagenomics
- Composition of soil microbial communities in the rhizosphere of cucumber cultivars with differing nitrogen acquisition efficiency
- Antibiotic resistance genes in manure-amended soil and vegetables at harvest.
- Roots from distinct plant developmental stages are capable of rapidly selecting their own microbiome without the influence of environmental and soil edaphic factors
- Exercising influence: distinct biotic interactions shape root microbiomes.
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