Molecular dynamics simulations highlight the structural differences among DNA: DNA, RNA:RNA, and DNA:RNA hybrid duplexes
Explore this paper's citation graph
Summary
The observation of a stable “B-RNA” structure is somewhat surprising and suggests significant kinetic barriers to structural conversion in RNA structures on a nanosecond time scale.
- Type
- article
- Published
- 1997-05-28
- Cited by
- 218
- References
- 0
- OpenAlex
- https://openalex.org/W1971820073
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:93361307
Keywords
RNA, Chemistry, DNA, Stacking, Crystallography
References
No references recorded for this paper.
Cited by
- Molecular modeling of drug-DNA complexes: an update.
- Molecular dynamics simulation of the human U2B" protein complex with U2 snRNA hairpin IV in aqueous solution.
- Discovery and Structural Characterization of G-quadruplex DNA in Human Acetyl-CoA Carboxylase Gene Promoters: Its Role in Transcriptional Regulation and as a Therapeutic Target for Human Disease.
- Structural insight into antisense gapmer-RNA oligomer duplexes through molecular dynamics simulations
- Sequence-specific Solution Structures of the Four Isosequential Pairs of Single-stranded DNAs and RNAs
- 3'-endo/4'-exo Locked Thymidine in the Dickerson-Drew Dodecamer Causes Local Base Pairing Distortions – An NMR Structure and Hydration Study
- NMR structure of the chimeric hybrid duplex r(gcaguggc)⋅r(gcca)d(CTGC) comprising the tRNA-DNA junction formed during initiation of HIV-1 reverse transcription
- A new smoothing function to introduce long-range electrostatic effects in QM/MM calculations.
- Biophysical Properties and Thermal Stability of Oligonucleotides of RNA Containing 7,8-Dihydro-8-hydroxyadenosine
- Prebiotic synthesis of nucleic acids
- Molecular Dynamics Simulations of RNA Systems
- Reversible B/A Transitions in Single DNA Molecule Immersed in A Water Drop
- Molecular Modeling of Nucleic Acid Structure: Energy and Sampling
- Molecular Modeling of Nucleic Acid Structure: Setup and Analysis
- Molecular modeling of nucleic acid structure
- NMR solution structure of dsDNA containing a bicyclic D-arabino-configured nucleotide fixed in an O4'-endo sugar conformation.
- Molecular dynamics simulation of nucleic acids.
- Inherent DNA curvature and flexibility correlate with TATA box functionality.
- Simulations of the molecular dynamics of nucleic acids.
- Detection of cyclin D1 mRNA by hybridization sensitive NIC-oligonucleotide probe.
Related papers
- Survey of possible layer stacking structures
- Modulating the Interlayer Stacking of Covalent Organic Frameworks for Efficient Acetylene Separation.
- Stacking variants for doubly-connected systems arranged according to the percentages of hexagonal stacking
- Converting SMILES to Stacking Interaction Energies
- Converting SMILES to Stacking Interaction Energies
- Converting SMILES to Stacking Interaction Energies
- Polytypes of long-period stacking structures synchronized with chemical order in a dilute Mg–Zn–Y alloy
- Stacking Sequence Changes in A 3 B-Type Close-Packed Structures: a One-Dimensional Stacking Model
- Exploring RNA Condensation