Multiple sequence alignment with Clustal X.

Keywords

Software portability, Computer science, Multiple sequence alignment, Sequence alignment, Bioinformatics

References

• WWW-query: an on-line retrieval system for biological sequence banks.Guy Perrière, Manolo Gouy — 1996
• The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.Julie Thompson — 1997
• The neighbor-joining method: a new method for reconstructing phylogenetic trees.Naruya Saitou, M Nei — 1987
• Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.Osamu Gotoh — 1996
• SAGA: sequence alignment by genetic algorithm.Cédric Notredame — 1996
• CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.Julie Thompson, Desmond G. Higgins, Toby J. Gibson — 1994
• Confidence Limits on Phylogenies: An Approach Using the BootstrapJoseph Felsenstein — 1985
• PHYLIP-Phylogeny inference package (Version 3.2)Joe Felsenstein — 1989
• CLUSTAL: a package for performing multiple sequence alignment on a microcomputerDesmond G. Higgins, Paul M. Sharp — 1988
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• Use of drug resistance sequence data for the systematic detection of non-B human immunodeficiency virus type 1 (HIV-1) subtypes: how to create a sentinel site for monitoring the genetic diversity of HIV-1 at a country scale.Arjan F. Theil — 2001
• Evolution of tuf genes: ancient duplication, differential loss and gene conversion聡 金栗, 一男 天野 — 2001
• Role of Amino Acid Residues in Transmembrane Segments IS6 and IIS6 of the Na+ Channel α Subunit in Voltage-dependent Gating and Drug Block*Vladimir Yarov‐Yarovoy, Jancy C. McPhee, Diane Idsvoog — 2002
• Biochemical Characterization of a Membrane-bound Manganese-containing Superoxide Dismutase from the CyanobacteriumAnabaena PCC 7120*AlfredC. Jordan, Javier Murcia Zorita, Fernando Baquero‐Artigao — 2002
• Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676.Günther J. Horvath, Esq. R. Berzero — 2003
• Fire exit is a potential four transmembrane protein expressed in developing Drosophila gliaL. Coull, D. Hagedorn, G. Krainz — 2003
• Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshiiYves Thoraval — 2003
• Genomic analysis in the sting-2 quantitative trait locus for defensive behavior in the honey bee, Apis mellifera.長島千恵子, 内山菜智子, 小林宏之 — 2003
• Hypermutation of HIV Type 1 Genomes Isolated from Infants Soon after Vertical InfectionIrene Koulinska, Beth Chaplin, Davis Mwakagile — 2003
• Identification and distribution of a two-pore domain potassium channel in the CNS of Aplysia californica.Дружков Олег Борисович, Б К Дружков — 2004
• Widespread A-to-I RNA Editing of Alu-Containing mRNAs in the Human TranscriptomeRosa Pérez Riesco — 2004
• The first crystal structure of hyperthermostable NAD-dependent glutamate dehydrogenase from Pyrobaculum islandicum.Sandra Hastenteufel — 2005
• TGGE analysis of the diversity of ammonia-oxidizing and denitrifying bacteria in submerged filter biofilms for the treatment of urban wastewaterAna Morilla Palacios — 2006
• The complete sequence of the genome of Humulus japonicus latent virusKris Hansen, Scott Burton, Mark A. Tomai — 2006
• Siglec-15: an immune system Siglec conserved throughout vertebrate evolution.А. Бовкун, В.К. Гаранин, П.Г. Малиборский — 2007
• Role of HPF (hibernation promoting factor) in translational activity in Escherichia coli.Marco Scheibe — 2008
• The evolutionary history of Eryngium (Apiaceae, Saniculoideae): rapid radiations, long distance dispersals, and hybridizations.勝彦 稲田 — 2008
• The LTR retrotransposon micropia in the cardini group of Drosophila (Diptera: Drosophilidae): a possible case of horizontal transfer西屋 克己, Lizandra J Robe, Elgion L S Loreto — 2008

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