PhyloChip hybridization uncovered an enormous bacterial diversity in the rhizosphere of different potato cultivars: many common and few cultivar-dependent taxa.
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Summary
The phylogenetic composition of bacterial communities in the rhizosphere of three potato cultivars grown at two distant field sites was analysed and sequence analysis of six 16S rRNA gene clone libraries corresponded well with the taxonomic community structure evidenced by the PhyloChip hybridization.
- Type
- article
- Published
- 2011-03-01
- Cited by
- 224
- References
- 43
- Access
- Open access
- OpenAlex
- https://openalex.org/W1912465121
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:30331899
Keywords
Biology, Rhizosphere, Cultivar, Botany, Ribosomal DNA
References
- Effects of plant genotype and growth stage on the structure of bacterial communities associated with potato (Solanum tuberosum L.)
- Phylogenetic Analysis of Microbial Diversity in the Rhizoplane of Oilseed Rape (Brassica napus cv. Westar) Employing Cultivation-Dependent and Cultivation-Independent Approaches
- Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology
- Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds.
- Use of 13C labeling to assess carbon partitioning in transgenic and nontransgenic (parental) rice and their rhizosphere soil microbial communities.
- The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site.
- Rhizosphere bacteria affected by transgenic potatoes with antibacterial activities compared with the effects of soil, wild-type potatoes, vegetation stage and pathogen exposure.
- Effects of transgenic fructan-producing potatoes on the community structure of rhizosphere and phyllosphere bacteria.
- Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere.
- Effects of genetically modified potatoes with increased zeaxanthin content on the abundance and diversity of rhizobacteria with in vitro antagonistic activity do not exceed natural variability among cultivars
- The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity
- Impact of Plant Functional Group, Plant Species, and Sampling Time on the Composition of nirK-Type Denitrifier Communities in Soil
- Bacterial diversity of soils assessed by DGGE, T-RFLP and SSCP fingerprints of PCR-amplified 16S rRNA gene fragments: do the different methods provide similar results?
- Plant-Dependent Genotypic and Phenotypic Diversity of Antagonistic Rhizobacteria Isolated from Different Verticillium Host Plants
- Pseudomonas biocontrol agents of soilborne pathogens: looking back over 30 years.
- Effects of T4 Lysozyme Release from Transgenic Potato Roots on Bacterial Rhizosphere Communities Are Negligible Relative to Natural Factors
- Establishment of introduced antagonistic bacteria in the rhizosphere of transgenic potatoes and their effect on the bacterial community.
- Molecular microbial ecology: land of the one-eyed king.
- Influence of Different Cultivars on Populations of Ammonia-Oxidizing Bacteria in the Root Environment of Rice
- Pyrosequencing Reveals a Highly Diverse and Cultivar-Specific Bacterial Endophyte Community in Potato Roots
Cited by
- Safe-Site Effects on Rhizosphere Bacterial Communities in a High-Altitude Alpine Environment
- Bioaugmentation and rhizosphere-assisted biodegradation as strategies for optimization of the dissipation capacity of biobeds.
- Characterization of Bacillus amyloliquefaciens strain BAC03 in disease control and plant growth promotion
- A Small Number of Low-abundance Bacteria Dominate Plant Species-specific Responses during Rhizosphere Colonization
- Normal operating range of the microbial community under potato
- Manipulation of the plant microbiome : antimicrobial peptide expression in nicotiana attenuata
- Evolution structurale et fonctionnelle des communautés microbiennes digestives sous l'influence de facteurs biotiques et abiotiques. Développement d'une biopuce ADN ciblant les gènes impliqués dans la dégradation des glucides complexes alimentaires
- Effects of silver nanoparticles on soil microorganisms and maize biomass are linked in the rhizosphere
- Detecting unknown sequences with DNA microarrays: explorative probe design strategies.
- Impact of plant domestication on rhizosphere microbiome assembly and functions
- Current overview on the study of bacteria in the rhizosphere by modern molecular techniques: a mini‒review
- Functional Analysis of Pseudomonas savastanoi pv. savastanoi Type III Secretion System Effectors
- The rhizosphere microbiome and plant health.
- Adaptation and diversification of bacterial communities to pesticide contaminants in on-farm biopurification systems via mobile genetic elements
- Genetic and functional characterization of culturable plant‐beneficial actinobacteria associated with yam rhizosphere
- A new proposal for a principal component‐based test for high‐dimensional data applied to the analysis of PhyloChip data
- Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment
- Resistance of bacterial communities in the potato rhizosphere to disturbance and its application to agroecology
- Streptomyces – from Basic Microbiology to Role as a Plant Pathogen
- Plant genetics and interspecific competitive interactions determine ectomycorrhizal fungal community responses to climate change
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