Using geneid to Identify Genes

Keywords

Annotation, Variety (cybernetics), Benchmark (surveying), Computer science, Visualization

References

• GeneID in Drosophila.Eduardo Arguedas — 2000
• Rapid and sensitive sequence comparison with FASTP and FASTA.William R. Pearson — 1990
• An assessment of gene prediction accuracy in large DNA sequences.Roderic Guigó, Pankaj Agarwal, Josep F. Abril — 2000
• In silico identification of novel selenoproteins in the Drosophila melanogaster genomeSergi Castellano, Nadya Morozova, Marta Morey — 2001
• Computational prediction of eukaryotic protein-coding genesMichael Q. Zhang — 2002
• Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional GenomicsThomas Wiehe — 2000
• Gene-finding approaches for eukaryotes.Gary D. Stormo — 2000
• Prediction of gene structure.Roderic Guigó, Steen Knudsen, Neil L. Drake — 1992
• Recent advances in gene structure prediction.Michael R. Brent, Roderic Guigó — 2004
• Evaluation of gene-finding programs on mammalian sequences.Sanja Rogić, Alan K. Mackworth, B. F. Francis Ouellette — 2001
• Basic local alignment search tool.Stephen F. Altschul, Warren Gish, Webb Miller — 1990
• Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotypeOlivier Jaillon, Jean‐Marc Aury, Frédéric Brunet — 2004
• Genome sequence of the Brown Norway rat yields insights into mammalian evolutionRichard A. Gibbs, George M. Weinstock, Michael L. Metzker — 2004
• Sequence and analysis of chromosome 2 of Dictyostelium discoideumGernot Glöckner, Ludwig Eichinger, Karol Szafranski — 2002
• Using GeneWise in the Drosophila annotation experiment.Ewan Birney, Richard Durbin — 2000
• Assembling Genes from Predicted Exons in Linear Time with Dynamic ProgrammingRoderic Guigó — 1998
• EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNARichard Mott — 1997
• Reconsidering the evolution of eukaryotic selenoproteins: a novel nonmammalian family with scattered phylogenetic distributionSergi Castellano, Sergey V. Novoselov, Gregory V. Kryukov — 2004
• Gff2ps: Visualizing Genomic AnnotationsJosep F. Abril, Roderic Guigó — 2000
• Apollo: a sequence annotation editorSE Lewis, SMJ Searle, Nomi L. Harris — 2002

Cited by

• Discovery and functional characterization of cardiovascular long noncoding RNAs.Brent N. Reed — 2015
• De Novo DNA Synthesis in Aedes aegypti Midgut Cells as a Complementary Strategy to Limit Dengue Viral ReplicationXosé Manuel Lens — 2018
• Long-read based assembly and synteny analysis of a reference Drosophila subobscura genome reveals signatures of structural evolution driven by inversions recombination-suppression effectsGuy Marchessault — 2019
• Coding sequence density estimation via topological pressureDavid Koslicki, Daniel J. Thompson — 2011
• Analysis of Genomic and Proteomic Sequences using DSP TechniquesRaja Sekhar Kakumani — 2013
• Method development and application of Next Generation Sequencing in forward geneticsGeo Velikkakam James — 2014
• Selenoprotein discovery using neural networksMiguel Lupi Alves, Carlos Lourenço — 2005
• Analyse bio-informatique du protéome mitochondrial et du spectre des mutations de la protéine Opa1Marc Ferré — 2009
• Identification des signatures génétiques de la sélection chez le chienA. Vaysse — 2011
• dictyBase 2015: Expanding data and annotations in a new software environmentSiddhartha Basu, Petra Fey, David Jimenez‐Morales — 2015
• Molecular Diagnosis of Hereditary Fructose Intolerance: Founder Mutation in a Community from India.Sunita Bijarnia‐Mahay, Sireesha Movva, Neerja Gupta — 2015
• Applications of genetic algorithms in bioinformaticsAmie Radenbaugh — 2008
• Phylogeny-based analysis of gene clustersRoland Wittler — 2010
• Advances in long noncoding RNAs: identification, structure prediction and function annotationXingli Guo, Lin Gao, Yu Wang — 2015
• Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphomaAkanksha Verma, Yanwen Jiang, Wei Du — 2015
• Identification of genetic variants associated with alternative splicing using sQTLseekeRJean Monlong, Miquel Calvo, Pedro G. Ferreira — 2014
• KONAGAbase: a genomic and transcriptomic database for the diamondback moth, Plutella xylostellaAkiya Jouraku, Kimiko Yamamoto, Seigo Kuwazaki — 2013
• A Genome-Wide Survey of Switchgrass Genome Structure and OrganizationManoj K. Sharma, Rita Sharma, Peijian Cao — 2012
• Genomic and Secretomic Analyses Reveal Unique Features of the Lignocellulolytic Enzyme System of Penicillium decumbensGuodong Liu, Lei Zhang, Xiaomin Wei — 2013
• Genome-Wide Association between Branch Point Properties and Alternative SplicingAndré Corvelo, Martina Hallegger, Christopher W. J. Smith — 2010

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