EST2Prot: Mapping EST sequences to proteins

Keywords

UniGene, Expressed sequence tag, Biology, Computational biology, DNA microarray

References

• The PIR-International Protein Sequence DatabaseD. G. George, Lois T. Hunt, W. C. Barker — 1999
• MRP8, A New Member of ABC Transporter Superfamily, Identified by EST Database Mining and Gene Prediction Program, Is Highly Expressed in Breast CancerTapan K. Bera, Sang Hyuk Lee, Giuliana Salvatore — 2001
• Gene annotation: prediction and testing.Jennifer Ashurst, John Collins — 2003
• Pieces of the puzzle: expressed sequence tags and the catalog of human genesGregory D. Schuler — 1997
• STACK: Sequence Tag Alignment and Consensus KnowledgebaseAlan Christoffels — 2001
• A contig assembly program based on sensitive detection of fragment overlaps.Xiaoqiu Huang — 1992
• Identifying secretomes in people, pufferfish and pigs.Eric W. Klee — 2004
• Discovery of three genes specifically expressed in human prostate by expressed sequence tag database analysis.George Vasmatzis, Magnus Essand, Ulrich Brinkmann — 1998
• PartiGene—constructing partial genomesJohn Parkinson, A. James Anthony, James D. Wasmuth — 2004
• The cadherin superfamily in neural development: diversity, function and interaction with other molecules.Shinji Hirano — 2003
• Gene Ontology: tool for the unification of biologyMichael Ashburner, Catherine A. Ball, Judith A. Blake — 2000
• Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locusVolker Brendel, Liqun Xing, Wei Zhu — 2004
• Detecting protein function and protein-protein interactions from genome sequences.Edward M. Marcotte, Matteo Pellegrini, Ho Leung Ng — 1999
• ESTAnnotator: a tool for high throughput EST annotationAgnes Hotz‐Wagenblatt — 2003
• BIND: the Biomolecular Interaction Network DatabaseGary D. Bader — 2003
• MRP9, an unusual truncated member of the ABC transporter superfamily, is highly expressed in breast cancerTapan K. Bera, Carlo Iavarone, Vasantha Kumar M.V. — 2002
• DIANA-EST: a statistical analysisArtemis G. Hatzigeorgiou, Petko Fiziev, Martin Reczko — 2001
• Statistically rigorous automated protein annotationWerner G. Krebs, Philip E. Bourne — 2004
• ESTIMA, a tool for EST management in a multi-project environmentCharu G. Kumar, Richard D. LeDuc, George Gong — 2004
• The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic speciesJohn Quackenbush — 2001

Cited by

• CPC: assess the protein-coding potential of transcripts using sequence features and support vector machineLei Kong, Yong Zhang, Zhiqiang Ye — 2007
• Inference and Validation of Protein IdentificationsManfred Claassen — 2012
• The quest for orthologs, the tree of basal animals, and taxonomic profiles of metagenomesFabian Schreiber — 2010

Related papers

• GENERATION AND ANALYSIS OF ESTS FROM MOUSE SPERMATOGENIC CELL AND SERTOLI CELL CDNA LIBRARIESPaula R. Brown, Dipak Mahato, Tong Zhou — 2007
• 노각나무(Stewartia koreana Nakai)의 cDNA library 제작 및 EST 분석임수빈, 김준기, 최영인 — 2011
• A comprehensive nonredundant expressed sequence tag collection for the developing Rattus norvegicus heart.Jennifer Laffin, Todd E. Scheetz, Maria de Fátima Bonaldo — 2004
• IMAGE cDNA clones, UniGene clustering, and ACeDB: an integrated resource for expressed sequence information.Greg Miller, Rainer Fuchs, Eric C. Lai — 1997
• Construction of a full-length cDNA library from Pinus koraiensis and analysis of EST datasetJoonki Kim, Subin Im, Sun Hee Choi — 2011
• Construction of a Full-length cDNA Library from Korean Stewartia (Stewartia koreana Nakai) and Characterization of EST DatasetSubin Im, Joonki Kim, Young In Choi — 2011
• EST-based in silico identification and in vitro test of antimicrobial peptides in Brassica napusTao Ke, Huihui Cao, Junyan Huang — 2015
• Discovery of germ cell-specific transcripts by expressed sequence tag database analysis.Aleksandar Rajkovic, Changning Yan, Michal Klysik — 2001
• High-throughput gene discovery in the rat.Todd E. Scheetz, Jennifer Laffin, Brian Berger — 2004
• Construction and Primary Analysis of cDNA Library From Young Mulberry LeavesFang Rong — 2008