GC-compositional strand bias around transcription start sites in plants and fungi

Shigeo Fujimori, Takanori Washio, Masaru Tomita · BMC Genomics · 2005

Summary

The GC-skew (C > G) around the TSS is strictly conserved between monocot and eudicot plants and fungi, and is a good candidate index for TSS prediction in plant genomes, where there is a lack of correlation among CpG islands and genes.

Type: article
Published: 2005-02-28
Cited by: 94
References: 30
Access: Open access
DOI: https://doi.org/10.1186/1471-2164-6-26
PubMed: https://pubmed.ncbi.nlm.nih.gov/15733327/
PMC: https://www.ncbi.nlm.nih.gov/pmc/articles/555766/
OpenAlex: https://openalex.org/W1840978491
Semantic Scholar: https://api.semanticscholar.org/CorpusID:458556

Keywords

Biology, Genetics, DNA microarray, Computational biology, Transcription (linguistics)

References

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Are Barley Dwarfing Genes Important in Tolerance to Abiotic StressThomas Moore — 2012
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The GC Skew Index: A Measure of Genomic Compositional Asymmetry and the Degree of Replicational SelectionKazuharu Arakawa, Masaru Tomita — 2007
Divergence of CpG island promoters: A consequence or cause of evolution?Jafar Sharif, Takaho A. Endo, Tetsuro Toyoda — 2010
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GC-compositional strand bias around transcription start sites in plants and fungi

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