GIPSy: Genomic island prediction software.
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Summary
GIPSy is the first life-style-specific genomic island prediction software to perform analyses of PAIs, MIs, RIs and SIs, opening a door for a better understanding of bacterial genome plasticity and the adaptation to new traits.
- Type
- article
- Published
- 2016-08-20
- Cited by
- 137
- References
- 38
- OpenAlex
- https://openalex.org/W1819081776
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2049498
Keywords
Biology, Genome, Pathogenicity island, Adaptation (eye), Virulence
References
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- Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior
- Prediction of Putative Resistance Islands in a Carbapenem-Resistant Acinetobacter baumannii Global Clone 2 Clinical Isolate
- Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation
- Antimicrobial resistance surveillance in the genomic age
- Pathoadaptive Mutations of Escherichia coli K1 in Experimental Neonatal Systemic Infection
- Assessing the Genotypic Differences between Strains of Corynebacterium pseudotuberculosis biovar equi through Comparative Genomics
- An In Silico Identification of Common Putative Vaccine Candidates against Treponema pallidum: A Reverse Vaccinology and Subtractive Genomics Based Approach
- Whole-Genome Sequence of a Colombian Acinetobacter baumannii Strain, a Coproducer of OXA-72 and OXA-255-Like Carbapenemases
- Characterization of Genomic Islands and Mobile Regions of Microbial Genomes in the Context of Infectious Disease
- Analysis of Genomic Islands and Other Features in Draft Versus Complete Bacterial Genomes
- Analyses of the probiotic property and stress resistance-related genes of Lactococcus lactis subsp. lactis NCDO 2118 through comparative genomics and in vitro assays
- Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo
- On The Power and Limits of Computational Functional Genomics for Bacterial Lifestyle Prediction
- LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis
- A Practical Guide for Comparative Genomics of Mobile Genetic Elements in Prokaryotic Genomes.
- Improved genomic island predictions with IslandPath-DIMOB
- Genomic Architecture of the Two Cold-Adapted Genera Exiguobacterium and Psychrobacter: Evidence of Functional Reduction in the Exiguobacterium antarcticum B7 Genome
- Whole-Genome Analysis of an Extensively Drug-Resistant Acinetobacter baumannii Strain XDR-BJ83: Insights into the Mechanisms of Resistance of an ST368 Strain from a Tertiary Care Hospital in China
- Searching whole genome sequences for biochemical identification features of emerging and reemerging pathogenic Corynebacterium species
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