Inferring coalescence times from DNA sequence data.
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Summary
Extensions are presented that allow for the effects of uncertainty in knowledge of population size and mutation rates, for variability in population sizes, for regions of different mutation rate, and for inference concerning the coalescence time of the entire population.
- Type
- article
- Published
- 1997-02-01
- Cited by
- 1,037
- References
- 30
- Access
- Open access
- OpenAlex
- https://openalex.org/W1793259860
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:5937027
Keywords
Inference, Biology, Population, Mutation rate, Genetics
References
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- Evolutionary relationship of DNA sequences in finite populations.
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- Ancestral Inference in Population Genetics
- Book Reviews: Stochastic Simulation Brian D. Ripley New York: John Wiley and Sons, 1987. xiv + 237 pp
- Estimating the Age of the Common Ancestor of Men from the ZFY Intron
- Genealogical-tree probabilities in the infinitely-many-site model
- The “Eve” Hypotheses: A Genetic Critique and Reanalysis
- Monte Carlo inference methods in population genetics
- Absence of polymorphism at the ZFY locus on the human Y chromosome.
- Molecular and population genetic analysis of allelic sequence diversity at the human beta-globin locus.
- Unrooted genealogical tree probabilities in the infinitely-many-sites model.
- WHEN DID EVE LIVE? AN EVOLUTIONARY DETECTIVE STORY
- On the number of segregating sites in genetical models without recombination.
- On the genealogy of nested subsamples from a haploid population
- The length of time required for a selectively neutral mutant to reach fixation through random frequency drift in a finite population.
- Allelic genealogy and human evolution.
Cited by
- Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation
- Reconstructing the population history of European Romani from genome-wide data.
- Multilocus tests of Pleistocene refugia and ancient divergence in a pair of Atlantic Forest antbirds (Myrmeciza)
- Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study
- Climate change and human colonization triggered habitat loss and fragmentation in Madagascar
- The application of approximate bayesian computation in the calibration of hydrological models
- Flavin-containing monooxygenase 3 (FM03) : evolution, protein structure and causative mutations of Trimethylaminuria
- Statistical Inference Utilizing Agent Based Models
- Méthodes bayesiennes pour l'estimation de l'histoire démographique et de la pression de sélection à partir de la structure génétique des populations
- Phylodynamic Methods for Infectious Disease Epidemiology
- Estimation of the Multiple Testing Burden for Genomewide Association Studies of Common Variants
- Individual heterogeneity in life history processes: Estimation and applications of demographic models to stage-structured arthropod populations
- Recent Advances in Approximate Bayesian Computation Methods
- Case Studies in Mathematical Modeling: Ecology, Physiology, and Cell Biology
- Population genetic inference of demographic processes in the African Wild Silk Moth, Gonometa postica (Lasiocampidae)
- A Pseudo-Marginal Perspective on the ABC Algorithm
- Approximate maximum likelihood estimation using data-cloning ABC
- Statistical inference on evolutionary processes in Alpine ibex (Capra ibex): mutation, migration and selection
- Genetic patterning at Austronesian contact zones
- Maximum likelihood parameter estimation in time series models using sequential Monte Carlo
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