Selection of informative clusters from hierarchical cluster tree with gene classes

Keywords

Hierarchical clustering, Cluster analysis, Computer science, Tree (set theory), Set (abstract data type)

References

• Computational and Statistical Approaches to GenomicsWei Zhang, Ilya Shmulevich — 2007
• Antipsychotic drug treatment induces differential gene expression in the rat cortexOuti Kontkanen, Petri Törönen, Merja Lakso — 2002
• Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clustersLani F. Wu, Timothy R. Hughes, Armaity P. Davierwala — 2002
• Analysis and visualization of gene expression data using Self-Organizing MapsJanne Nikkilä, Petri Törönen, Samuel Kaski — 2002
• Genome-wide discovery of transcriptional modules from DNA sequence and gene expressionEran Segal, Roman Yelensky, Daphne Koller — 2003
• Functional discovery via a compendium of expression profiles.Timothy R. Hughes, Matthew J. Marton, Allan R Jones — 2000
• Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteinsShuai Weng — 2003
• Cluster analysis and display of genome-wide expression patterns.Michael B. Eisen, Paul T. Spellman, Patrick O. Brown — 1998
• Judging the quality of gene expression-based clustering methods using gene annotation.Francis D. Gibbons, Frederick P. Roth — 2002
• Discriminative Clustering: Optimal Contingency Tables by Learning MetricsJ. Sinkkonen, Samuel Kaski, J. Nikkilä — 2002
• Exploratory Clustering of Gene Expression Profiles of Mutated Yeast StrainsMerja Oja, J. Nikkilä, P. Törönen — 2003

Cited by

• Algorithms to Explore the Structure and Evolution of Biological NetworksCarleton L. Kingsford, Saket Navlakha — 2010
• Transcriptional memory emerges from cooperative histone modificationsHans Binder, Lydia Steiner, Thimo Rohlf — 2011
• Estimation of identification methods of gene clusters using GO term annotations from a hierarchical cluster treeYoichi Yamada, Yuki Miyata, Masanori Higashihara — 2008
• Computational analysis of gene expression dataGráinne Kerr — 2009
• Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classesSusmita Datta, Somnath Datta, Somnath Datta — 2006
• Exploring genomic medicine using integrative biologyIsaac S. Kohane, Atul J. Butte — 2005
• Visual data mining in intrinsic hierarchical complex biodataChristian W. Martin — 2009
• Sequential and concerted gene expression changes in a chronic in vitro model of parkinsonism.James G. Greene, J. Timothy Greenamyre, Raymond Dingledine — 2008
• Interspliced transcription chimeras: Neglected pathological mechanism infiltrating gene accession queries?Martti Tolvanen, Pauli J. Ojala, Petri Törönen — 2009
• An improved localization algorithm with wireless heartbeat monitoring system for patient safety in psychiatric wardsChen-Yang Cheng, Tsuo‐Hung Lan, Chin‐Hong Chan — 2013
• DNA microarray study on gene expression profiles in co-cultured endothelial and smooth muscle cells in response to 4- and 24-h shear stressSepideh Heydarkhan‐Hagvall, Shu Chien, Sven Nelander — 2006
• Age and sex differences in brain gene expression in neonatal rats.Dan Torbati, Balagangadhar Totapally, André Raszynski — 2008
• Techniques for clustering gene expression dataGráinne Kerr, Heather J. Ruskin, Martin Crane — 2008
• Improving clustering with metabolic pathway dataDiego H. Milone, Georgina Stegmayer, Mariana G. López — 2014
• Using expression information to discover new drug and vaccine targets in the malaria parasite Plasmodium falciparum.Jason A. Young, Elizabeth A. Winzeler — 2005
• Data Mining Over Biological Datasets: An Integrated Approach Based on Computational IntelligenceGeorgina Stegmayer, M. Gérard, Diego H. Milone — 2012
• Revised Phylogeny and Novel Horizontally Acquired Virulence Determinants of the Model Soft Rot Phytopathogen Pectobacterium wasabiae SCC3193Johanna Nykyri, Outi Niemi, Patrik Koskinen — 2012
• Recursive Cluster Elimination (RCE) for classification and feature selection from gene expression dataMalik Yousef, Segun Jung, Louise C. Showe — 2007
• Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of InformationSaket Navlakha, James R. White, Niranjan Nagarajan — 2009
• Theme discovery from gene lists for identification and viewing of multiple functional groupsPetri Pehkonen, Garry Wong, Petri Törönen — 2005

Related papers

• Application of RBF Neural Networks in the Fruit Color Sorting MachineChuangxin Guo — 2008
• Sorting and Optimization in Program DesigningPing Chen — 2007
• Design of intelligent book sorting system based on PLC controlChang Wang, Lihong Sun, Xujie Hou — 2022
• Determination of sorting-unit for making the optimal delivery route sorting planJoon-Mook Lim — 2017
• Research on optimal acquisition quantity of used items with uncertain quality and sorting policy in remanufacturingYang Ai-fen — 2014
• Design of Automatic Sorting System of Workpiece Based on Multi-sensor DetectionJiayu Li, Jianhui Peng, Sufeng Yin — 2020
• Research Situation and Development Trend on Grain Sorting MachineryGao Ying-wu — 2005
• A combined multidimensional scaling and hierarchical clustering view for the exploratory analysis of multidimensional dataPaul Craig, Néna Roa-Seïler — 2013