Co-occurrence of transcription factor binding sites (Gemeinsames Auftreten von Transkriptionsfaktor-Bindungsstellen)

Keywords

Transcription factor, Computational biology, Biology, Genetics

References

• Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase.David Stein — 1990
• Coordinate positioning of MEF2 and myogenin binding sites.公徳 清水, 由巳 今西, 進 川本 — 1996
• Morphogen gradient interpretationSancho García — 2001
• Nitrogen-source regulation of yeast gamma-glutamyl transpeptidase synthesis involves the regulatory network including the GATA zinc-finger factors Gln3, Nil1/Gat1 and Gzf3.Jean–Yves Springael, Michel Pennînckx — 2003
• Computational detection of cis-regulatory modulesNeus Miró — 2003
• The MIPS mammalian protein?Cprotein interaction database熈 戸島 — 2005
• A SELEX primer.Tim Fitzwater, Barry Polisky — 1996
• Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.Otto G. Berg, Peter H. von Hippel — 1987
• Large-scale human promoter mapping using CpG islandsIlya Ioshikhes, Michael Q. Zhang — 2000
• Definition of 5' and 3' structural boundaries of the chromatin domain containing the ovalbumin multigene family.G M Lawson, Brian J. Knoll, Carl J. March — 1982
• An improved map of conserved regulatory sites for Saccharomyces cerevisiaeKenzie D. MacIsaac, Ting Wang, D. Benjamin Gordon — 2006
• Genomic Regulatory Systems: Development and EvolutionEric H. Davidson — 2005
• Multiple signals are required for function of the human granulocyte-macrophage colony-stimulating factor gene promoter in T cells.Frank J. Jenkins, Peter N. Cockerill, Dirk Bohmann — 1995
• Comprehensive analysis of the base composition around the transcription start site in MetazoaStein Aerts, Gert Thijs, Michał Dąbrowski — 2004
• The accuracy of several multiple sequence alignment programs for proteinsPaulo Nuin, Zhouzhi Wang, Elisabeth R.M. Tillier — 2006
• Novel NFAT sites that mediate activation of the interleukin-2 promoter in response to T-cell receptor stimulationJohn W. Rooney, Ya‐Lin Sun, Laurie H. Glimcher — 1995
• Crystallographic structure of the T domain–DNA complex of the Brachyury transcription factorChristoph W. Müller, Bernhard G. Herrmann — 1997
• Fast index based algorithms and software for matching position specific scoring matricesMichael Beckstette, Robert Homann, Robert Giegerich — 2006
• RFX1, a transactivator of hepatitis B virus enhancer I, belongs to a novel family of homodimeric and heterodimeric DNA-binding proteinsWalter Reith, Catherine Ucla, Emmanuèle Barras — 1994
• Functional annotation of a full-length mouse cDNA collectionJun Kawai, Akira Shinagawa, Kazuhiro Shibata — 2001

Cited by

No citing papers recorded for this paper.

Related papers

• Using transcription factor binding site co-occurrence to predict regulatory regions.Holger Klein, Martin Vingron — 2007
• Discovery of Transcription Factor Binding SitesClaudia Fried — 2003
• Asymmetric Conservation within Pairs of Co-occurred Motifs Mediates Weak Direct Transcription Factor Binding in ChIP-seq DataV. G. Levitsky, Dmitry Oshchepkov, Elena V. Zemlyanskaya — 2020
• A Preliminary Study on the Detection of Transcription Factor Binding SitesErola Pairó, Santiago Marco, Alexandre Perera — 2009
• Preferred distances between transcription factor binding sitesIvan V. Kulakovskiy, Artem S. Kasianov, A. A. Belostotsky — 2011