The small world of metabolism

Keywords

Chemistry, Computational biology, Biology

References

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• Metabolic Pathway Analysis: Basic Concepts and Scientific Applications in the Post‐genomic EraChristophe H. Schilling, Stefan Schuster, Bernhard Ø. Palsson — 1999
• Collective dynamics of ‘small-world’ networksDuncan J. Watts, Steven H. Strogatz — 1998
• Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements.J. Pramanik, Jay D. Keasling — 1997
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• The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities.Jeremy S. Edwards, Bernhard Ø. Palsson — 2000
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• Emergence of Scaling in Random NetworksB. McInnes, Jannene S. McBride, N. Evans — 1999
• 2 Structural Properties of Metabolic Networks: Implications for Evolution and Modelling of MetabolismD. Fell, A. Wagner

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• Popularity versus similarity in growing networksSuzanne Mackenzie, Lee J. M. Seymour — 2011
• Exact algorithms for s-club finding and related problemsAlexander Schäfer — 2009
• Measure of robustness for complex networksCaterina Scoglio, Mina Youssef — 2012
• Evidence of Scale-Free Topology and Dynamics in Gene Regulatory NetworksSandy Shaw — 2003
• Comparison of Centralities for Biological NetworksDirk Koschützki, Falk Schreiber — 2004
• Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory NetworksDirk Koschützki, Falk Schreiber — 2008
• The relationship between orthology, protein domain architecture and protein functionSofia K. Forslund — 2011
• Modélisation structurelle des réseaux sociaux : application à un système d’aide à la décision en cas de crise sanitaireCynthia Basileu — 2011
• Random Walks on Complex Modular NetworksNataša Djurdjevac, Stefanie Bruckner, Tim Conrad — 2012
• On local behavior and global structures in the evolution of complex networksKatharina A. Zweig — 2007
• Network-based inference of protein function and disease-gene associationSamira Jaeger — 2012
• Computational Prediction of Protein-Protein Interactions on the Proteomic Scale Using Bayesian Ensemble of Multiple Feature DatabasesV. Kumar — 2011
• What You Believe Travels Differently: Information and Infection Dynamics across Sub-networksPatrick Grim, Christopher Reade, Daniel J. Singer — 2010
• Prédiction de réseaux d'interactions biomoléculaires à partir des données de la génomique comparéeFlorian Iragne — 2007
• Moment-Closure Approximations for Contact Processes in Adaptive NetworksGüven Demirel — 2013
• A network-based approach to cell metabolism: from structure to flux balancesO. Riera — 2015
• Comparative Functional Analysis and Identification of Regulatory Control in Gene Networks Using the Leucine-Responsive Regulatory protein and its Regulon as a Model SystemRobert Lintner — 2007
• Graph-based learning for information systemsXin Li — 2009
• Complex networks: analysis and controlClaudio Argento — 2008

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