Using BLAST for Performing Sequence Alignment

Keywords

Computer science, Ensembl, Protocol (science), Sequence (biology), Key (lock)

References

• Getting the most from PSI-BLAST.David T. Jones, Mark B. Swindells — 2002
• Percolation of annotation errors through hierarchically structured protein sequence databases.Walter R. Gilks, Benjamin Audit, Daniela De Angelis — 2005
• Issues in searching molecular sequence databasesStephen F. Altschul, Mark S. Boguski, Warren Gish — 1994
• Binformatics: not just for sequences anymoreDaniel J. Jackson, Matthew D. Healy, D DAVISON — 2003
• Protein database searches using compositionally adjusted substitution matricesStephen F. Altschul, John C. Wootton, E. Michael Gertz — 2005
• BLAST: at the core of a powerful and diverse set of sequence analysis toolsScott McGinnis, Thomas Madden — 2004
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Stephen F. Altschul — 1997
• Public databases: retrieving and manipulating sequences for beginners.Neil Woodford — 2004

Cited by

• Human protein function prediction : application of machine learning for integration of heterogeneous data sourcesAnna Lobley — 2010
• Revealing highly conserved regions in the E6 protein among distinct human papillomavirus types using comparative analysis of multiple sequence alignments.Jane Eyre Gabriel, DDLG de Figueiredo, RP de Farias — 2013
• DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic dataGustavo Arango-Argoty, E. Garner, Amy Pruden — 2017
• Designing probe from E6 genome region of human Papillomavirus 16 for sensing applications.N. A. Parmin, U. Hashim, Subash C.B. Gopinath — 2018
• Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-FlyYongsheng Bai, Jeff Kinne, Lizhong Ding — 2017
• Computational Tools for Annotating Antibiotic Resistance in Metagenomic DataArango Argoty, Gustavo Alonso — 2019
• annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencingCarlos Farkas, Antonia Recabal, Andy Mella — 2022
• Analisis Polimorfisme Gen LEPR ( Reseptor Leptin ) pada Spesies Ruminansia Domba, Kambing, dan Sapi Berdasarkan Basis Data Bank Gen (Gene Polymorphism Analysis of LEPR (Leptin Receptor) in Ruminant Species of Sheep, Goat and Cattle Based on Gene Bank Database)Dody Houston Billaq, S. D. Pramesti, Danes Suhendra
• Strategies for Vaccine Design for Coronavirus All Variants of Concern Using Immunoinformatics TechniquesAnamika Basu — 2022

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