The igraph software package for complex network research

Keywords

Computer science, Software, Software engineering, Programming language

References

• An Atlas of GraphsRonald C. Read, Robin Wilson — 1999
• Exploratory social network analysis with PajekBethany S. Dohleman — 2006
• The PageRank Citation Ranking : Bringing Order to the WebLawrence M. Page, Sergey Brin, Rajeev Motwani — 1999
• Emergence of scaling in random networksAlbert-Ĺaszló Barabási, Réka Albert — 1999
• Centrality in social networks conceptual clarificationLinton C. Freeman — 1978
• Are randomly grown graphs really random?Duncan S. Callaway, John E. Hopcroft, Jon Kleinberg — 2001
• An Algorithm for Drawing General Undirected GraphsTomihisa Kamada, Satoru Kawai — 1989
• FANMOD: a tool for fast network motif detectionSebastian Wernicke, Florian Rasche — 2006
• LGL: creating a map of protein function with an algorithm for visualizing very large biological networks.Alex Adai, Shailesh V. Date, Shannon C. Wieland — 2004
• An Information Flow Model for Conflict and Fission in Small GroupsKonstantin Avrachenkov, Aleksei Y. Kondratev, Vladimir V. Mazalov — 1977
• Modularity and community structure in networks.M. E. J. Newman — 2006
• Graph drawing by force‐directed placementThomas M. J. Fruchterman, Edward M. Reingold — 1991
• Random graphs with arbitrary degree distributions and their applications.M. E. J. Newman, Steven H. Strogatz, Duncan J. Watts — 2000
• Random graphsAlan Frieze — 2006
• Numerische Mathematik 1Josef Stoer — 1989
• Exploratory Social Network Analysis with PajekWouter de Nooy, Andrej Mrvar, Vladimir Batagelj — 2005
• A note on two problems in connexion with graphsE. Dijkstra — 1959
• GraphML Progress Report ? Structural Layer ProposalUlrik Brandes, Markus Eiglsperger, I. Herman — 2001

Cited by

• An automated analysis of highly complex flow cytometry‐based proteomic data憲司 中村, 正典 七條 — 2012
• Pathway-Based Evaluation in Early Onset Colorectal Cancer Suggests Focal Adhesion and Immunosuppression along with Epithelial-Mesenchymal Transition完 小崎 — 2012
• Network-based enrichment analysis of gene expression through protein-protein interaction dataS. Bhargava, K. R. Vasuki, T. G. Sreeramamurthy — 2012
• Inferring influenza global transmission networks without complete phylogenetic informationSeth McConchie, Paul Hausladen, J.T. Mihalczo — 2014
• Across-year social stability shapes network structure in wintering migrant sparrows.Betty LaDuke — 2014
• Temperate origins of long-distance seasonal migration in New World songbirdsPedro Cerezo Galán — 2014
• State-Level Legal Preparedness for Nuclear and Radiological Emergencies in the U.S.: A Network Analysis of State Laws and Regulations純子 倭文 — 2014
• Can Learning Collaboratives Support Implementation By Rewiring Professional Networks?Daniel Arfib — 2016
• The role of heterogeneity in contact timing and duration in network models of influenza spread in schoolsSomphob Soongsathitanon, M Tuntawiroon, Thonnapong Thongpraparn — 2015
• The Tara Oceans voyage reveals global diversity and distribution patterns of marine planktonic ciliatesAnna Gimmler, Ralf Korn, Colomban de Vargas — 2016
• Prospective use of whole genome sequencing (WGS) detected a multi-country outbreak of Salmonella EnteritidisAnatolii Solovianenko — 2016
• Detection of Side Chain Rearrangements Mediating the Motions of Transmembrane Helices in Molecular Dynamics Simulations of G Protein-Coupled Receptors健 神子島 — 2017
• Systemic evaluation of cellular reprogramming processes exploiting a novel R-tool: eegc孜 竹崎 — 2017
• Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drugSusana Perandones Piedró, Marco Sandulli Saldaña — 2017
• Networks of loss: Relationships among symptoms of prolonged grief following spousal and parental lossWerner Stolz — 2017
• A Combination of Stable Isotope Probing, Illumina Sequencing, and Co-occurrence Network to Investigate Thermophilic Acetate- and Lactate-Utilizing BacteriaГолубкова Ольга Владимировна — 2017
• Quantitative approach for the risk assessment of African swine fever and Classical swine fever introduction into the United States through legal imports of pigs and swine productsDanilo Ghira — 2017
• Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farmingSilvia Marcu — 2018
• Using geomorphological variables to predict the spatial distribution of plant species in agricultural drainage networks美紀 遠山 — 2018
• Identification of novel diabetes impaired miRNA-transcription factor co-regulatory networks in bone marrow-derived Lin-/VEGF-R2+ endothelial progenitor cellsG. H. Fichtl — 2018

Related papers

• vegan: Community Ecology PackageJari Oksanen, Gavin L. Simpson, F. Guillaume Blanchet — 2001
• R: A language and environment for statistical computing.R Core Team — 2014
• Graph drawing by force‐directed placementThomas M. J. Fruchterman, Edward M. Reingold — 1991
• Cytoscape: a software environment for integrated models of biomolecular interaction networks.Paul Shannon, Andrew Markiel, Owen Ozier — 2003
• Modularity and community structure in networks.M. E. J. Newman — 2006
• The Structure and Function of Complex NetworksMichael Newman — 2003
• Fast unfolding of communities in large networksVincent D. Blondel, Jean‐Loup Guillaume, Renaud Lambiotte — 2008
• Community detection in graphsSanto Fortunato — 2009
• Gephi: An Open Source Software for Exploring and Manipulating NetworksMathieu Bastian, Sébastien Heymann, Mathieu Jacomy — 2009
• Collective dynamics of ‘small-world’ networksDuncan J. Watts, Steven H. Strogatz — 1998