Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs.
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Summary
How one can exploit the hierarchical nature of RNA folding by combining the low resolution, global information provided by SAXS with local information on RNA structure, from either experiments or state-of-the-art RNA structure prediction algorithms, to further increase the resolution and quality of models obtained fromSAXS is discussed.
- Type
- article
- Published
- 2009-01-01
- Cited by
- 14
- References
- 42
- OpenAlex
- https://openalex.org/W180580495
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6316056
Keywords
Small-angle X-ray scattering, Scattering, Resolution (logic), Folding (DSP implementation), Crystallography
References
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- Situs: A package for docking crystal structures into low-resolution maps from electron microscopy.
- Automated de novo prediction of native-like RNA tertiary structures
- XIIIth International Conference on Small-Angle Scattering
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- Folding of small helical proteins assisted by small-angle X-ray scattering profiles.
- Using Situs for the registration of protein structures with low-resolution bead models from X-ray solution scattering
- Noncoding RNA in development
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Cited by
- Structure modeling from small angle X-ray scattering data with elastic network normal mode analysis.
- Multiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy
- Structural characterization of proteins and complexes using small-angle X-ray solution scattering.
- Determination of the GH3.12 protein conformation through HPLC-integrated SAXS measurements combined with X-ray crystallography.
- Review of the fundamental theories behind small angle X-ray scattering, molecular dynamics simulations, and relevant integrated application
- Prediction of RNA 1H and 13C chemical shifts: a structure based approach.
- SAXS studies of ion-nucleic acid interactions.
- SAXS Studies of RNA: structures, dynamics, and interactions with partners
- Structural studies of a double-stranded RNA from trypanosome RNA editing by small-angle X-ray scattering.
- The evolution of RNA structural probing methods: From gels to next‐generation sequencing
- Experimentally-Driven Protein Structure Modeling
- Facile Synthesis, Static, and Dynamic Magnetic Characteristics of Varying Size Double-Surfactant-Coated Mesoscopic Magnetic Nanoparticles Dispersed Stable Aqueous Magnetic Fluids
- Probing protein aggregation through spectroscopic insights and multimodal approaches: A comprehensive review for counteracting neurodegenerative disorders
- Structural Insights on E. coli Phosphoenolpyruvate Carboxykinase structures, conformations, and ligand specificity from Integrated X-ray Methods
- 1.18 Small and Wide Angle X-ray Scattering from Biological Macromolecules and their Complexes in Solution
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