A Review of REDCRAFT: Simultaneous Investigation of Structure and Dynamics of Proteins from RDC Restraints
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Summary
The ability of REDCRAFT in structure determination of proteins using only backbone RDCs from two alignment media, or C–N, N–H, C–H from one alignment medium and N–H] from the second alignment medium is demonstrated.
- Type
- review
- Published
- 2012-01-01
- Cited by
- 10
- References
- 89
- OpenAlex
- https://openalex.org/W170693272
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:91314286
Keywords
Chemistry, Residual dipolar coupling, Residual, Protein dynamics, Biological system
References
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- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.
- Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings.
- Dipolar couplings as a probe of molecular dynamics and structure in solution.
- Use of dipolar 1H–15N and 1H–13C couplings in the structure determination of magnetically oriented macromolecules in solution
- Simultaneous Structure and Dynamics of a Membrane Protein using REDCRAFT: Membrane-bound form of Pf1 Coat Protein
- REDCAT: a residual dipolar coupling analysis tool.
- NMR dipolar couplings for the structure determination of biopolymers in solution
- Model-free analysis of protein backbone motion from residual dipolar couplings.
- Local dynamic amplitudes on the protein backbone from dipolar couplings: toward the elucidation of slower motions in biomolecules.
- De novo determination of protein backbone structure from residual dipolar couplings using Rosetta.
- NMR in structural proteomics and beyond.
Cited by
- DYNAFOLD: A DYNAMIC PROGRAMMING APPROACH TO PROTEIN BACKBONE STRUCTURE DETERMINATION FROM MINIMAL SETS OF RESIDUAL DIPOLAR COUPLINGS
- Improvements to REDCRAFT: a software tool for simultaneous characterization of protein backbone structure and dynamics from residual dipolar couplings
- Advances in the REDCAT software package
- Structure Calculation and Reconstruction of Discrete State Dynamics from Residual Dipolar Couplings using REDCRAFT
- PDBMine: A Reformulation of the Protein Data Bank to Facilitate Structural Data Mining
- Improvements of the REDCRAFT Software Package
- An Investigation of Minimum Data Requirement for Successful Structure Determination of Pf2048.1 with REDCRAFT.
- REDCRAFT: A Computational Platform Using Residual Dipolar Coupling NMR Data for Determining Structures of Perdeuterated Proteins Without NOEs
- Concurrent Identification and Characterization of Protein Structure and Continuous Internal Dynamics with REDCRAFT
- Structure Calculation of α, α/β, β Proteins From Residual Dipolar Coupling Data Using REDCRAFT
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