Metabolic network construction based on the genome of the marine diatom Thalassiosira pseudonana and the analysis of genome-wide transcriptome data to investigate triacylglyceride accumulation
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Summary
This analysis has resulted in building the first whole genome BioCyc pathway model for T. pseudonana that includes over three hundred metabolic pathways, illustrated not only the activity of fatty acid and lipid pathways but also the interplay of other pathways that affect the accumulation of TAGs under different environmental conditions.
- Type
- dissertation
- Published
- 2013-01-01
- Cited by
- 5
- References
- 162
- Access
- Open access
- OpenAlex
- https://openalex.org/W99706163
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:81889502
Keywords
Thalassiosira pseudonana, Genome, Biology, Transcriptome, Computational biology
References
- Characterization of the growth and lipid content of the diatom Chaetoceros muelleri
- A Model for Carbohydrate Metabolism in the Diatom Phaeodactylum tricornutum Deduced from Comparative Whole Genome Analysis
- Anaerobic digestion of microalgae as a necessary step to make microalgal biodiesel sustainable.
- A new P(II) protein structure identifies the 2-oxoglutarate binding site.
- Foundations of Systems Biology - Using Cell Illustrator® and Pathway Databases
- Mastering Perl for Bioinformatics
- THE LIPIDS OF DIATOMS
- Bioactive Marine Natural Products
- Computational Modeling of Gene Regulatory Networks - A Primer
- Bioengineering and molecular biology of plant pathways
- Cellular Lipid Metabolism
- Systems biology for signaling networks
- Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
- Building bioinformatics solutions with Perl, R and MySQL
- Molecular mechanisms of photosynthesis
- Lipids in aquatic ecosystems
- The metabolic blueprint of Phaeodactylum tricornutum reveals a eukaryotic Entner-Doudoroff glycolytic pathway.
- IMG ER: A System for Microbial Genome Annotation Expert Review and Curation
- Bioinformatics and functional genomics
- Lipid Production by Dunaliella Salina in Batch Culture: Effects of Nitrogen Limitation and Light Intensity
Cited by
- Diatom Milking: A Review and New Approaches
- The Omics Dashboard for interactive exploration of gene-expression data
- Genome-scale metabolic model of the diatom Thalassiosira pseudonana highlights the importance of nitrogen and sulfur metabolism in redox balance
- Comparative Analysis Of Orthologous Mast Cell Chymases Active Sites Using Bioinformatics Tools
- Comparative Analysis of Orthologous Mast Cell Chymases Active Sites Using Bioinformatics Tools
- Stem Cell Research International Comparative Analysis of Orthologous Mast Cell Chymases Active Sites Using Bioinformatics Tools
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