Monte Carlo simulations.

Keywords

Monte Carlo method, Monte Carlo molecular modeling, Monte Carlo method in statistical physics, Dynamic Monte Carlo method, Statistical physics

References

• Feedback-optimized parallel tempering Monte CarloHelmut G Katzgraber, Simon Trebst, David A Huse — 2006
• Analytical rebridging Monte Carlo: Application to cis/trans isomerization in proline-containing, cyclic peptidesMinghong G. Wu, Michael W. Deem — 1999
• Hybrid Monte Carlo method for condensed-matter systems.B. Mehlig, Dieter W. Heermann, Bruce M. Forrest — 1992
• Efficient, multiple-range random walk algorithm to calculate the density of states.Fugao Wang, D. P. Landau — 2000
• Toward High-Resolution de Novo Structure Prediction for Small ProteinsPhilip Bradley, Kira M.S. Misura, David Baker — 2005
• Strict detailed balance is unnecessary in Monte Carlo simulationVasilios I. Manousiouthakis, Michael W. Deem — 1998
• End-bridging Monte Carlo: A fast algorithm for atomistic simulation of condensed phases of long polymer chainsVlasis G. Mavrantzas, Travis D. Boone, Evangelia Zervopoulou — 1999
• Configurational temperature density of states simulations of proteins.Nitin Rathore, Thomas A. Knotts, Juan Pablo — 2003
• Understanding molecular simulation: from algorithms to applicationsDaan Frenkel, Berend Smit, Mark A. Ratner — 1996
• Reversible multiple time scale molecular dynamicsMark E. Tuckerman, B. J. Berne, Glenn Martyna — 1992
• A configurational bias Monte Carlo method for linear and cyclic peptidesMichael W. Deem, Joel S. Bader — 1996
• Efficient Monte Carlo trial moves for polypeptide simulations.Marcos R. Betancourt — 2005
• Optimal allocation of replicas in parallel tempering simulations.Nitin Rathore, Manan Chopra, Juan Pablo — 2005
• A concerted rotation algorithm for atomistic Monte Carlo simulation of polymer melts and glassesLawrence R. Dodd, Travis D. Boone, Doros N. Theodorou — 1993
• Annealing Markov chain Monte Carlo with applications to ancestral inferenceCharles J. Geyer, E. A. Thompson — 1995
• Rapid protein fold determination using unassigned NMR dataJens Meiler, David Baker — 2003
• Computational methods for protein design and protein sequence variability: Biased Monte Carlo and replica exchangeXi Yang, Jeffery G. Saven — 2005
• Markov chains of infinite order and asymptotic satisfaction of balance: application to the adaptive integration method.David J. Earl, Michael W. Deem — 2004
• Hybrid Monte CarloA.D. Kennedy — 1988
• Optimal Allocation of Replicas to Processors in Parallel Tempering SimulationsDavid J. Earl, Michael W. Deem — 2004

Cited by

• Monte Carlo simulations for dosimetric verification in photon and electron beam radiotherapyM. Zarza Moreno — 2012
• Recent Advances in Cardiac SPECT Instrumentation and System DesignAlev Adil — 2013
• Accounting for biological aggregation in heating and imaging of magnetic nanoparticlesO.E. Yakimchenko, Ya. S. Lebedev — 2014
• The role of faceting and elongation on the magnetic anisotropy of magnetite Fe3O4 nanocrystalsGreg Lato — 2019
• CORAL: Development of A hybrid descriptor based QSTR model to predict the toxicity of Dioxins and Dioxin-like Compounds with Correlation Intensity Index and Consensus Modelling.Cristóbal Gómez Mayorga — 2022
• Systèmes magnétiques à frustration géométrique : approches expérimentale et théoriqueJ. Robert — 2007
• Surface modification and conjugation strategies for bioassay/biomaterial applicationsChandra Kumar Dixit — 2012
• Intérêt du rayonnement synchrotron dans la thérapie des tumeurs cérébrales : méthodologie et applications précliniquesPierrick Régnard — 2007
• Evaluation of Alternative Continuations of Chess OpeningsJamal Munshi — 2015
• Software for Calibration in Gamma-Ray spectrometric In-situ MeasurementsYe Yuan Josefsson — 2015
• Reliability Analysis of Flood Sea Defence Structures and Systems (Appendices)Pieter van Gelder — 2008
• Case-Based Reasoning for Adaptive Strategies in Texas Hold'em PokerJan Berge Ommedal, Eivind Solbakken — 2012
• New strategies in chemical synthesis and catalysisPignataro, B. — 2012
• Handbook of technology and innovation managementScott Shane — 2008
• Simulation Monte Carlo de suivi de positrons dans la matière biologique : applications en imagerie médicaleC. Le Loirec — 2007
• Monte Carlo and experimental small-field dosimetry applied to spatially fractionated synchrotron radiotherapy techniquesImmaculada Martínez‐Rovira — 2012
• Risk Analysis of ODOT’s HMA Percent Within Limits (PWL) SpecificationWilliam F. McTernan, Stephen A. Cross — 2007
• Comparison of Latin Hypercube Sampling and Simple Random Sampling Applied to Neural Network Modeling of HfO 2 Thin Film FabricationJung‐Hwan Lee, Young‐Don Ko, Ilgu Yun — 2006
• Estudo de modelos de conservação de paridade por crescimento de superfícies.Felipe Aguiar Severino dos Santos — 2015
• The Number of MCMC Draws Needed to Compute Bayesian Credible BoundsJia Liu, Daniel J. Nordman, William Q. Meeker — 2016

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