Decoding the Structural Layer of Transcriptional Regulation : Computational Analyses of Chromatin and Chromosomal Aberrations
Explore this paper's citation graph
Summary
Gene activity is regulated at two separate layers: structural and chemical properties of DNA – the primary layer of encoding – and local signatures may enable, or disable, the binding of protei ...
- Type
- article
- Published
- 2010-01-01
- Cited by
- 0
- References
- 208
- Access
- Open access
- OpenAlex
- https://openalex.org/W50413602
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:81685208
Keywords
Chromatin, Layer (electronics), DNA, Genetics, Encoding (memory)
References
- Analysis of array CGH data: from signal ratio to gain and loss of DNA regions
- Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation.
- Discovery and Annotation of Functional Chromatin Signatures in the Human Genome
- SICTIN: Rapid footprinting of massively parallel sequencing data
- Inference in Hidden Markov Models (Springer Series in Statistics)
- Finite Mixture and Markov Switching Models
- High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
- A high resolution normalization strategy of chip-sequencing data using (multiple) experimental control measurements
- Probability Theory: Author index
- Biased Chromatin Signatures Around Polyadenylation Sites and Exons
- A statistical approach for array CGH data analysis
- INSIGHTS FROM GENOMIC PROFILING OF TRANSCRIPTION FACTORS
- Phenotypically concordant and discordant monozygotic twins display different DNA copy-number-variation profiles.
- Spatial Distribution of Di- and Tri-methyl Lysine 36 of Histone H3 at Active Genes*
- Epigenetics in cancer.
- Genome-Wide Profiling of Histone H3 Lysine 4 and Lysine 27 Trimethylation Reveals an Epigenetic Signature in Prostate Carcinogenesis
- Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
- Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors.
- Computation for ChIP-seq and RNA-seq studies
- Histone variants — ancient wrap artists of the epigenome
Cited by
No citing papers recorded for this paper.
Related papers
- Comparative analysis of chromatin landscape in regulatory regions of human housekeeping and tissue specific genes
- Hierarchical cooperation of transcription factors from integration analysis of DNA sequences, ChIP-Seq and ChIA-PET data
- Molecular Biology: Principles and Practice
- Characteristics of functional enrichment of human putative transcriptional target genes and its application to examining DNA binding sequences of proteins involved in chromatin interactions.
- Binding Profiles of Chromatin-Modifying Proteins Are Predictive for Transcriptional Activity and Promoter-Proximal Pausing
- Arabidopsis Motif Scanner