Generalized Linear Models for Identifying Predictors of the Evolutionary Diffusion of Viruses
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Summary
The application and evaluation of a model that integrates demographic and environmental predictors with molecular sequence data is described and evaluated by reconstructing the spread of H5N1 in Egypt while assessing the impact of individual predictors on evolutionary diffusion of the virus.
- Type
- article
- Published
- 2014-04-07
- Cited by
- 10
- References
- 28
- Access
- Open access
- OpenAlex
- https://openalex.org/W42007999
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2596936
Keywords
Markov chain Monte Carlo, Phylogeography, Inference, Econometrics, Bayesian probability
References
- Unravelling transmission trees of infectious diseases by combining genetic and epidemiological data
- A Single Amino Acid at the Hemagglutinin Cleavage Site Contributes to the Pathogenicity but Not the Transmission of Egyptian Highly Pathogenic H5N1 Influenza Virus in Chickens
- Bayesian random local clocks, or one rate to rule them all
- Phylogeography of influenza A H5N1 clade 2.2.1.1 in Egypt
- Spatiotemporal Dynamics and Epistatic Interaction Sites in Dengue Virus Type 1: A Comprehensive Sequence-Based Analysis
- CORRECTION
- Bayesian Phylogeography Finds Its Roots
- Spatial Distribution and Risk Factors of Highly Pathogenic Avian Influenza (HPAI) H5N1 in China
- The phylogeography of human viruses
- A global model of avian influenza prediction in wild birds: the importance of northern regions
- BART: Bayesian Additive Regression Trees
- Bayesian Phylogenetics with BEAUti and the BEAST 1.7
- Relating Phylogenetic Trees to Transmission Trees of Infectious Disease Outbreaks
- Synchrony, Waves, and Spatial Hierarchies in the Spread of Influenza
- Unifying the Epidemiological and Evolutionary Dynamics of Pathogens
- Phylodynamics of H5N1 avian influenza virus in Indonesia
- Environmental Predictors of Seasonal Influenza Epidemics across Temperate and Tropical Climates
- Improving Risk Models for Avian Influenza: The Role of Intensive Poultry Farming and Flooded Land during the 2004 Thailand Epidemic
- The seasonal flight of influenza: a unified framework for spatiotemporal hypothesis testing
- Zoonoses: Infectious Diseases Transmissible From Animals and Humans, Fourth Edition
Cited by
- Combining Phylogeography and Spatial Epidemiology to Uncover Predictors of H5N1 Diffusion
- Phylodynamic applications in 21st century global infectious disease research
- Characterising routes of H5N1 and H7N9 spread in China using Bayesian phylogeographical analysis
- Phylodynamics of Influenza A/H1N1pdm09 in India Reveals Circulation Patterns and Increased Selection for Clade 6b Residues and Other High Mortality Mutants
- Ecogeographic Drivers of the Spatial Spread of Highly Pathogenic Avian Influenza Outbreaks in Europe and the United States, 2016–Early 2022
- Phylodynamic approaches to studying avian influenza virus
- Ecological Changes Exacerbating the Spread of Invasive Ticks has Driven the Dispersal of Severe Fever with Thrombocytopenia Syndrome Virus Throughout Southeast Asia
- Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature
- Phylodynamic and phylogeographic reconstruction of IBV lineages: diverse paths and determinants, one goal for control
- Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature
- Cross-Continental Analysis of Vampire Bat Betaherpesvirus Reveals Limited Interference Among Strains and Local Geographic Spread
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