Quality control and evaluation of plant epigenomics data
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- Type
- article
- Published
- 2021-10-14
- Cited by
- 17
- References
- 91
- Access
- Open access
- OpenAlex
- https://openalex.org/W34648025
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:238859291
Keywords
Ideology, Argument (complex analysis), Power (physics), Political science, Law
References
- Human Body Epigenome Maps Reveal Noncanonical DNA Methylation Variation
- Genome-Wide Nucleosome Occupancy and Positioning and Their Impact on Gene Expression and Evolution in Plants1[OPEN]
- Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
- DNA Methylation Profiling Identifies CG Methylation Clusters in Arabidopsis Genes
- A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.
- Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
- PeakSeq: Systematic Scoring of ChIP-Seq Experiments Relative to Controls
- Genome-Wide Association of Histone H3 Lysine Nine Methylation with CHG DNA Methylation in Arabidopsis thaliana
- Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities
- Fast Computation and Applications of Genome Mappability
- Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
- Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis
- Establishing, maintaining and modifying DNA methylation patterns in plants and animals
- Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I.
- Highly integrated single-base resolution maps of the epigenome in Arabidopsis.
- RNA-mediated epigenetic regulation of gene expression
- Measuring reproducibility of high-throughput experiments
- Impact of sequencing depth in ChIP-seq experiments
- High Resolution Genome Wide Binding Event Finding and Motif Discovery Reveals Transcription Factor Spatial Binding Constraints
- Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly.
Cited by
- Greenscreen decreases Type I Errors and increases true peak detection in genomic datasets including ChIP-seq
- Identifying transcription factor-DNA interactions using machine learning
- Centromere repositioning and shifts in wheat evolution
- On the causes of gene-body methylation variation in Arabidopsis thaliana
- Genome-wide chromatin accessibility landscape and dynamics of transcription factor networks during ovule and fiber development in cotton
- BCL7A and BCL7B potentiate SWI/SNF-complex-mediated chromatin accessibility to regulate gene expression and vegetative phase transition in plants
- Functional Divergence in Orthologous Transcription Factors: Insights from AtCBF2/3/1 and OsDREB1C
- Establishing an optimized ATAC-seq protocol for the maize
- aChIP is an efficient and sensitive ChIP-seq technique for economically important plant organs
- ATAC‐seq in Emerging Model Organisms: Challenges and Strategies
- An improved nuclei isolation protocol from leaf tissue for single-cell transcriptomics
- DeepWheat: predicting the effects of genomic variants on gene expression and regulatory activities across tissues and varieties in wheat using deep learning
- RNA interference shapes stress responses in Arabidopsis thaliana
- Many roads lead to a plant cistrome: mapping and interpreting transcription factor binding in plants
- Advances and applications of ChIP-seq technologies in plants
- Grain-maturing temperature induces seed epi-memory via DNA methylation for subsequent development in rice (Oryza sativa L.)
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