Draft Genome Sequence of Amphirosellinia nigrospora JS-1675, an Endophytic Fungus from Pteris cretica
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Summary
The fungus Amphirosellinia nigrospora strain JS-1675 has been reported to exert antimicrobial effects against various plant-pathogenic bacteria and fungi and the draft genome sequence of A. Nigrospora is reported for the first time.
- Type
- article
- Published
- 2019-05-01
- Cited by
- 7
- References
- 16
- OpenAlex
- https://openalex.org/W31097494
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:157056799
Keywords
Humanities, Medicine, Art
References
- antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
- SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
- Fungal plant cell wall-degrading enzyme database: a platform for comparative and evolutionary genomics in fungi and Oomycetes
- fPoxDB: fungal peroxidase database for comparative genomics
- GapFiller: a de novo assembly approach to fill the gap within paired reads
- CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
- InterPro in 2011: new developments in the family and domain prediction database
- Fungal cytochrome P450 database
- AUGUSTUS: a web server for gene finding in eukaryotes
- NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries
- HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies
- FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors
- BAUM: improving genome assembly by adaptive unique mapping and local overlap‐layout‐consensus approach
- Antimicrobial activities of an oxygenated cyclohexanone derivative isolated from Amphirosellinia nigrospora JS‐1675 against various plant pathogenic bacteria and fungi
- BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
Cited by
- Draft Genome Sequence of Daldinia childiae JS-1345, an Endophytic Fungus Isolated from Stem Tissue of Korean Fir
- Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana
- Plants endophytes: unveiling hidden agenda for bioprospecting toward sustainable agriculture
- Applications of endophytic microbes in agriculture, biotechnology, medicine, and beyond.
- Current State and Future Directions of Genetics and Genomics of Endophytic Fungi for Bioprospecting Efforts
- Diversity of endophytic fungi hosted medicinal ferns: Biotechnological potentials and possible applications
- Challenges and update on fungal endophytes: classification, definition, diversity, ecology, evolution and functions
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