HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts
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Summary
Application of HoloVir to viral metagenomes from the coral Pocillopora damicornis and the sponge Rhopaloeides odorabile demonstrated that HoloVIR provides a valuable tool to characterize holobiont viral communities across species, environments, or experiments.
- Type
- article
- Published
- 2016-06-09
- Cited by
- 48
- References
- 90
- Access
- Open access
- OpenAlex
- https://openalex.org/W27375564
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:9666007
Keywords
Geology, Humanities, Philosophy
References
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- VIROME: a standard operating procedure for analysis of viral metagenome sequences
- Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics
- Identification of New Genomospecies in the Mycobacterium terrae Complex
- Origin of giant viruses from smaller DNA viruses not from a fourth domain of cellular life
- eggNOG v4.0: nested orthology inference across 3686 organisms
- Temperature induction of viruses in symbiotic dinoflagellates
- Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa
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- The use of informativity in the development of robust viromics-based examinations
- Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation
- Virome Assembly and Annotation: A Surprise in the Namib Desert
- Evaluating the core microbiota in complex communities: A systematic investigation
- Prevalent and persistent viral infection in cultures of the coral algal endosymbiont Symbiodinium
- FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data
- Coral-associated viral communities show high levels of diversity and host auxiliary functions
- Viruses in corals: hidden drivers of coral bleaching and disease?
- Viruses: contributors to and mitigators of black band disease in corals
- Reef invertebrate viromics: diversity, host specificity and functional capacity
- Viruses in Marine Ecosystems: From Open Waters to Coral Reefs.
- Environmental conditions affect activity and associated microorganisms of marine sponges.
- Morphological characterization of virus-like particles in coral reef sponges
- A RNA Virus Reference Database (RVRD) to Enhance Virus Detection in Metagenomic Data
- The Promises and Pitfalls of Machine Learning for Detecting Viruses in Aquatic Metagenomes
- Metagenomic analysis of viral communities in diseased Baikal sponge Lubomirskia baikalensis
- A symbiont phage protein aids in eukaryote immune evasion
- Thermal stress modifies the marine sponge virome.
- Physiology, syntrophy and viral interplay in the marine sponge holobiont
- Metavirome datasets from two endemic Baikal sponges Baikalospongia bacillifera
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