Minimum network constraint on reverse engineering to develop biological regulatory networks.
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Summary
A new constraint, i.e., the minimum network constraint, is proposed to facilitate the reconstruction of biological networks from microarray expression data or data of protein expression profiles, showing that the biological networks prefer to use the minimal networks to fulfill their functional tasks.
- Type
- article
- Published
- 2015-09-07
- Cited by
- 4
- References
- 24
- Access
- Open access
- OpenAlex
- https://openalex.org/W25981630
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:31578706
Keywords
Wheelchair, Shoulders, Paraplegia, Physical medicine and rehabilitation, Physical therapy
References
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- Sparsity as Cellular Objective to Infer Directed Metabolic Networks from Steady-State Metabolome Data: A Theoretical Analysis
- Boolean Network Model Predicts Knockout Mutant Phenotypes of Fission Yeast
- A Reverse Engineering Approach to Optimize Experiments for the Construction of Biological Regulatory Networks
- The yeast cell-cycle network is robustly designed.
- Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
- Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling
- Using Bayesian Networks to Analyze Expression Data
- Boolean dynamics of genetic regulatory networks inferred from microarray time series data
- How to infer gene networks from expression profiles
- Boolean network inference from time series data incorporating prior biological knowledge
- Systematic Genetic Analysis with Ordered Arrays of Yeast Deletion Mutants
- Process-based network decomposition reveals backbone motif structure
- Boolean Network Model Predicts Cell Cycle Sequence of Fission Yeast
- Inferring Boolean network structure via correlation
- A comprehensive molecular interaction map of the budding yeast cell cycle
- Revealing strengths and weaknesses of methods for gene network inference
- Process-Driven Inference of Biological Network Structure: Feasibility, Minimality, and Multiplicity
Cited by
- From Boolean Network Model to Continuous Model Helps in Design of Functional Circuits
- Reconstructing the regulatory circuit of cell fate determination in yeast mating response
- JacLy: a Jacobian-based method for the inference of metabolic interactions from the covariance of steady-state metabolome data
- Investigation of presence of endofungal bacteria in Rhizopus spp. ısolated from the different food samples
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