Structure of the entire stalk region of the Dynein motor domain.

Keywords

Political science

References

• Dynein: A Protein with Adenosine Triphosphatase Activity from CiliaI. R. Gibbons, A. J. Rowe — 1965
• Structural basis for microtubule binding and release by dynein明子 金井 — 2012
• Dynein motors of the Chlamydomonas flagellum.Linda M. DiBella, Stephen M. King — 2001
• AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes.Andrew F. Neuwald, L. Aravind, John L. Spouge — 1999
• Cytoplasmic dynein and dynactin in cell division and intracellular transport.Sher Karki, Erika L.F. Holzbaur — 1999
• Simple and accurate scheme to compute electrostatic interaction: zero-dipole summation technique for molecular system and application to bulk water.Ikuo Fukuda, Narutoshi Kamiya, Yasushige Yonezawa — 2012
• Comparison of simple potential functions for simulating liquid waterWilliam L. Jorgensen, Jayaraman Chandrasekhar, Jeffry D. Madura — 1983
• AMBER-based hybrid force field for conformational sampling of polypeptidesNarutoshi Kamiya, Yukihisa S. Watanabe, Satoshi Ono — 2005
• Determination of Alkali and Halide Monovalent Ion Parameters for Use in Explicitly Solvated Biomolecular SimulationsIn Suk Joung, Thomas E. Cheatham — 2008
• Molecular Dynamics Simulations Accelerated by GPU for Biological Macromolecules with a Non-Ewald Scheme for Electrostatic Interactions.Tadaaki Mashimo, Yoshifumi Fukunishi, Narutoshi Kamiya — 2013
• Analysis of alpha-helical coiled coils with the program TWISTER reveals a structural mechanism for stutter compensation.Sergei V. Strelkov, Peter Burkhard — 2002
• The CCP4 suite: programs for protein crystallography.Number Collaborative Computational Project — 1994
• Cilia and flagella of eukaryotesI. R. Gibbons — 1981
• The Filling Potential Method: A Method for Estimating the Free Energy Surface for Protein−Ligand DockingYoshifumi Fukunishi, Yoshiaki Mikami, Haruki Nakamura — 2003
• Solvent content of protein crystals.Brian W. Matthews — 1968
• Three-dimensional structure of cytoplasmic dynein bound to microtubulesNaoko Mizuno, Akihiro Narita, Takahide Kon — 2007
• Application of zero-dipole summation method to molecular dynamics simulations of a membrane protein systemNarutoshi Kamiya, Ikuo Fukuda, Haruki Nakamura — 2013
• Retrograde transport by the microtubule-associated protein MAP 1CBryce M. Paschal, Richard Vallée — 1987
• Molecular dynamics scheme for precise estimation of electrostatic interaction via zero-dipole summation principle.Ikuo Fukuda, Yasushige Yonezawa, Haruki Nakamura — 2011
• Socket: a program for identifying and analysing coiled-coil motifs within protein structures.John Walshaw, Derek N. Woolfson — 2001

Cited by

• Structure of human cytoplasmic dynein-2 primed for its powerstrokeHelgo Schmidt, Ruta Zalyte, L. Urnavicius — 2014
• Dynein motors: How AAA+ ring opening and closing coordinates microtubule binding and linker movementHelgo Schmidt — 2015
• A flipped ion pair at the dynein–microtubule interface is critical for dynein motility and ATPase activationSeiichi Uchimura, Takashi Fujii, Hiroko Takazaki — 2015
• The Mechanistic Basis of Dynein Microtubule Binding and Its RegulationSirui Zou — 2015
• How dynein moves along microtubulesGira Bhabha, Graham T. Johnson, Courtney M. Schroeder — 2015
• Structural Change in the Dynein Stalk Region Associated with Two Different Affinities for the Microtubule.Yosuke Nishikawa, Momoko Inatomi, Haruka Iwasaki — 2016
• Direct observation shows superposition and large scale flexibility within cytoplasmic dynein motors moving along microtubulesHiroshi Imai, Tomohiro Shima, Kazuo Sutoh — 2015
• How dynein and dynactin transport cargos: a structural perspective.Andrew P. Carter, Aristides G. Diamant, L. Urnavicius — 2016
• Emerging roles of NudC family: from molecular regulation to clinical implicationsQiqin Fu, Wei Wang, Tianhua Zhou — 2016
• A critical appraisal of the zero-multipole method: Structural, thermodynamic, dielectric, and dynamical properties of a water system.Han Wang, Haruki Nakamura, Ikuo Fukuda — 2016
• Elastic properties of dynein motor domain obtained from all-atom molecular dynamics simulationsNarutoshi Kamiya, Tadaaki Mashimo, Yu Takano — 2016
• Coiled-coil destabilizing residues in the group A Streptococcus M1 protein are required for functional interactionChelsea Stewart, Cosmo Z. Buffalo, J. Andrés Valderrama — 2016
• Coiled‐coils: The long and short of itLinda Truebestein, Thomas A. Leonard — 2016
• myPresto/omegagene: a GPU-accelerated molecular dynamics simulator tailored for enhanced conformational sampling methods with a non-Ewald electrostatic schemeKota Kasahara, Benson Ma, Kota Goto — 2016
• Model Building of Antibody-Antigen Complex Structures Using GBSA ScoresNoriko Shimba, Narutoshi Kamiya, Haruki Nakamura — 2016
• A physical model describing the transport mechanisms of cytoplasmic dyneinLaurie Elizabeth Trott — 2017
• An examination of the cytoplasmic dynein stepping mechanism at the single molecule levelLisa G. Lippert — 2016
• Angular measurements of the dynein ring reveal a stepping mechanism dependent on a flexible stalkLisa G. Lippert, Tali Dadosh, Jodi A. Hadden‐Perilla — 2017
• Structural atlas of dynein motors at atomic resolutionAkiyuki Toda, Hideaki Tanaka, Genji Kurisu — 2018
• Enhanced Sampling of Molecular Dynamics Simulations of a Polyalanine Octapeptide: Effects of the Periodic Boundary Conditions on Peptide Conformation.Kota Kasahara, Shun Sakuraba, Ikuo Fukuda — 2018

Related papers

No related papers recorded.