Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver
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Summary
These studies define selective, tissue-specific targets of Apobec-1-dependent RNA editing and show the functional consequences of editing are both transcript- and tissue- specific.
- Type
- article
- Published
- 2014-06-01
- Cited by
- 108
- References
- 57
- Access
- Open access
- OpenAlex
- https://openalex.org/W24946870
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:15963562
Keywords
Computer science
References
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- Effect of α4β7 Blockade on Intestinal Lymphocyte Subsets and Lymphoid Tissue Development
- Deletion of the AU-rich RNA binding protein Apobec-1 reduces intestinal tumor burden in Apc(min) mice.
- Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics.
- CD36 deficiency impairs intestinal lipid secretion and clearance of chylomicrons from the blood.
- Vitamin D Receptor As an Intestinal Bile Acid Sensor
- ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination
- Canonical A-to-I and C-to-U RNA Editing Is Enriched at 3′UTRs and microRNA Target Sites in Multiple Mouse Tissues
- The TES gene at 7q31.1 is methylated in tumours and encodes a novel growth-suppressing LIM domain protein
- Characterization and comparison of human nuclear and cytosolic editomes
- Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa.
- The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs.
Cited by
- RNA Editing in Pathogenesis of Cancer.
- The Mouse Genomes Project: a repository of inbred laboratory mouse strain genomes
- Re-editing the paradigm of Cytidine (C) to Uridine (U) RNA editing
- Flow-cytometric visualization of C>U mRNA editing reveals the dynamics of the process in live cells
- Reassessment of murine APOBEC1 as a retrovirus restriction factor in vivo
- Quantitative Proteomic Approaches in Mouse: Stable Isotope Incorporation by Metabolic (SILAC) or Chemical Labeling (Reductive Dimethylation) Combined with High‐Resolution Mass Spectrometry
- DNA Editing by APOBECs: A Genomic Preserver and Transformer.
- The Genetics of Epigenetic Inheritance: Modes, Molecules, and Mechanisms
- MicroRNA-122 confers sorafenib resistance to hepatocellular carcinoma cells by targeting IGF-1R to regulate RAS/RAF/ERK signaling pathways.
- The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3
- Functional requirements of AID’s higher order structures and their interaction with RNA-binding proteins
- Open Peer Review
- Novel modes of RNA editing in mitochondria
- Mapping and differential expression analysis from short-read RNA-Seq data in model organisms
- Rapid and dynamic transcriptome regulation by RNA editing and RNA modifications
- Controlling the Editor: The Many Roles of RNA-Binding Proteins in Regulating A-to-I RNA Editing.
- Translating the epitranscriptome
- Genes in Hiding.
- Structural components of chemosensory protein mutations in the silkworm moth, Bombyx mori
- RNA Editing: Another Level of Somatic Mutagenic Activity in Gastric Cancer.
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