Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information
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Summary
Higher-level sequence conservation between different cotton species and between the A- and D-subgenomes in tetraploid cotton was found, indicating a common evolutionary origin for orthologous and paralogous loci in Gossypium.
- Type
- article
- Published
- 2012-10-09
- Cited by
- 78
- References
- 94
- Access
- Open access
- OpenAlex
- https://openalex.org/W23046547
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:15830455
Keywords
Soil survey, Soil series, Drainage, Geography, Land use
References
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Cited by
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- Genome-Wide Mining, Characterization, and Development of Microsatellite Markers in Gossypium Species
- QTL Mapping for Fiber and Yield Traits in Upland Cotton under Multiple Environments
- A high-density SSR genetic map constructed from a F2 population of Gossypium hirsutum and Gossypium darwinii.
- Construction of BAC contig maps of homoeologous chromosomes A12 and D12 of Gossypium hirsutum L. acc. TM-1
- Constructing a high-density linkage map for Gossypium hirsutum × Gossypium barbadense and identifying QTLs for lint percentage.
- Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
- Dynamic QTL mapping for plant height in Upland cotton (Gossypium hirsutum)
- Development of chromosome-specific markers with high polymorphism for allotetraploid cotton based on genome-wide characterization of simple sequence repeats in diploid cottons (Gossypium arboreum L. and Gossypium raimondii Ulbrich)
- Mapping QTL for cotton fiber quality traits using simple sequence repeat markers, conserved intron-scanning primers, and transcript-derived fragments
- Variations and Transmission of QTL Alleles for Yield and Fiber Qualities in Upland Cotton Cultivars Developed in China
- Genome-wide analysis of the WRKY transcription factor gene family in Gossypium raimondii and the expression of orthologs in cultivated tetraploid cotton
- Discovery and identification of a novel Ligon lintless-like mutant (Lix) similar to the Ligon lintless (Li1) in allotetraploid cotton
- Molecular Cloning and Characterization of an Allene Oxide Cyclase Gene Associated with Fiber Strength in Cotton
- Genetic map and QTL controlling fiber quality traits in upland cotton (Gossypium hirsutum L.)
- Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta)
- Identification of cotton fiber quality quantitative trait loci using intraspecific crosses derived from two near-isogenic lines differing in fiber bundle strength
- QTLs conferring FOV 7 resistance detected by linkage and association mapping in Upland cotton
- Construction of a high-density genetic map and lint percentage and cottonseed nutrient trait QTL identification in upland cotton (Gossypium hirsutum L.)