A Novel Method of Characterizing Genetic Sequences: Genome Space with Biological Distance and Applications
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Summary
This work proposes a new approach to characterize genetic sequences that provides a powerful new tool for analyzing and annotating genomes and their phylogenetic relationships and shows that a triple-reassortant swine virus circulating in North America and the Eurasian swineirus belong to the lineage of the influenza A (H1N1) virus.
- Type
- article
- Published
- 2011-03-02
- Cited by
- 117
- References
- 44
- Access
- Open access
- OpenAlex
- https://openalex.org/W21399690
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:5440910
Keywords
Supply chain, Computer science, Process management, Restructuring, Supply chain management
References
- Introduction to Mathematical Statistics (6th Edition)
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- Basic Algebra = 代数学入門
- Handbook Of Computational Molecular Biology
- MUSCLE: a multiple sequence alignment method with reduced time and space complexity
- Pigs as ‘Mixing Vessels’ for the Creation of New Pandemic Influenza A Viruses
- Introduction to computational biology
- Evolution of base-substitution gradients in primate mitochondrial genomes.
- DNA sequence representation without degeneracy.
- 2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates
- On the Complexity of Multiple Sequence Alignment
- Triple-reassortant swine influenza A (H1) in humans in the United States, 2005-2009.
- Clustering of DNA sequences in human promoters.
- Clustering DNA sequences by feature vectors.
- Mitochondrial DNA sequences of primates: Tempo and mode of evolution
- Antigenic and Genetic Characteristics of the Early Isolates of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans
- Comparisons of eukaryotic genomic sequences.
- Molecular and Morphological Supertrees for Eutherian (Placental) Mammals
- INTRODUCTION TO COMPUTATIONAL BIOLOGY: MAPS, SEQUENCES AND GENOMES.
- Implications of the emergence of a novel H1 influenza virus.
Cited by
- A measure of DNA sequence similarity by Fourier Transform with applications on hierarchical clustering.
- Information Extraction for Virus Classification and Robust Dimension Reduction
- Progressive alignment of genomic signals by multiple dynamic time warping.
- Descriptive Statistics of the Genome: Phylogenetic Classification of Viruses
- Ebolavirus Classification Based on Natural Vectors
- APSLAP: An Adaptive Boosting Technique for Predicting Subcellular Localization of Apoptosis Protein
- Selection of a screening panel of rhinoviral serotypes.
- Real Time Classification of Viruses in 12 Dimensions
- k-mer sparse matrix model for genetic sequence and its applications in sequence comparison.
- AGP: A Multimethods Web Server for Alignment-Free Genome Phylogeny
- Phylogenetic analysis of DNA sequences based on k-word and rough set theory
- K-mer natural vector and its application to the phylogenetic analysis of genetic sequences
- Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification
- A framework for alignment-free methods to perform similarity analysis of biological sequence
- Protein map: an alignment-free sequence comparison method based on various properties of amino acids.
- Development of Self-Compressing BLSOM for Comprehensive Analysis of Big Sequence Data
- Protein sequence comparison based on K-string dictionary.
- Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance.
- Effective gene prediction by high resolution frequency estimator based on least-norm solution technique
- Gene comparison based on the repetition of single-nucleotide structure patterns
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