Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes.
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Summary
Although the seven concatenation genes gave the best correlation, the concatenated sequences of rpoD, rctB and toxR have the practical advantage of showing a considerable gap between the maximal interspecies similarity and the minimal intraspecies similarity recorded, meaning that they can be used quite conveniently for species identification of vibrios.
- Type
- article
- Published
- 2010-01-01
- Cited by
- 215
- References
- 30
- OpenAlex
- https://openalex.org/W19648344
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:13268317
Keywords
Computer science
References
- Inferring the Evolutionary History of Vibrios by Means of Multilocus Sequence Analysis
- Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium).
- Virulence and molecular typing of Vibrio harveyi strains isolated from cultured dentex, gilthead sea bream and European sea bass.
- Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization
- Molecular identification of Vibrio harveyi-related isolates associated with diseased aquatic organisms.
- Probable synonymy of the nitrogen-fixing genus Azotobacter and the genus Pseudomonas.
- MODELTEST: testing the model of DNA substitution
- The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
- A seven-gene, multilocus, genus-wide approach to the phylogeny of mycobacteria using supertrees.
- Identification of vibrio cholerae and vibrio mimicus by multilocus sequence analysis (MLSA).
- Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests.
- Vibrio gigantis sp. nov., isolated from the haemolymph of cultured oysters (Crassostrea gigas).
- Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).
- Delineation of Borrelia burgdorferi sensu lato species by multilocus sequence analysis and confirmation of the delineation of Borrelia spielmanii sp. nov.
- Multilocus Sequence Analysis Reveals that Vibrio harveyi and V. campbellii Are Distinct Species
- Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences.
- Rapid extraction of bacterial genomic DNA with guanidium thiocyanate
- Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.
- Vibrio rotiferianus sp. nov., isolated from cultures of the rotifer Brachionus plicatilis.
- Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov.
Cited by
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- pirABvp-Bearing Vibrio parahaemolyticus and Vibrio campbellii Pathogens Isolated from the Same AHPND-Affected Pond Possess Highly Similar Pathogenic Plasmids
- Quorum sensing and genomic studies of a marine bacterium Vibrio variabilis strain T01
- Isolation and identification of Vibrio toranzoniae associated with diseased red conger eel (Genypterus chilensis) farmed in Chile.
- Evaluation of a loop‐mediated isothermal amplification method for the rapid detection of Vibrio harveyi in cultured marine shellfish
- Diversity of vibrios in the haemolymph of the spider crab Maja brachydactyla
- Pathogenesis, virulence factors and virulence regulation of vibrios belonging to the Harveyi clade
- Advanced Microbial Taxonomy Combined with Genome-Based-Approaches Reveals that Vibrio astriarenae sp. nov., an Agarolytic Marine Bacterium, Forms a New Clade in Vibrionaceae
- Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii
- Vibrio mexicanus sp. nov., isolated from a cultured oyster Crassostrea corteziensis
- Diversity and pathogenecity of Vibrio species in cultured bivalve molluscs.
- Genetic and phylogenetic evidence for misidentification of Vibrio species within the Harveyi clade
- Rapid and Sensitive Detection of Vibrio alginolyticus by Loop-Mediated Isothermal Amplification Combined with a Lateral Flow Dipstick Targeted to the rpoX Gene.
- Photobacterium aquae sp. nov., isolated from a recirculating mariculture system.
- Application of polycolloid-releasing substrate to remediate trichloroethylene-contaminated groundwater: a pilot-scale study.
- Photosynthesis versus Exopolymer Degradation in the Formation of Microbialites on the Atoll of Kiritimati, Republic of Kiribati, Central Pacific
- Proteomics and multilocus sequence analysis confirm intraspecific variability of Vibrio tapetis.
- Multilocus sequence analysis of Vibrio tapetis, the causative agent of Brown Ring Disease: description of Vibrio tapetis subsp. britannicus subsp. nov.
- Multiple gene analyses reveal extensive genetic diversity among ‘Candidatus Phytoplasma mali’ populations
- Vibrio toranzoniae sp. nov., a new member of the Splendidus clade in the genus Vibrio.
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