Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient

Keywords

Computer science

References

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• Multivariate models and algorithms for systems biologyDongxiao Zhu, Lipi Acharya — 2011
• A New Symbolic Representation for the Identification of Informative Genes in Replicated Microarray ExperimentsJeremy D. Scheff, Richard R. Almon, Debra C. DuBois — 2010
• R/BHC: fast Bayesian hierarchical clustering for microarray dataRichard S. Savage, Katherine Heller, Yang Xu — 2009
• Noniterative Convex Optimization Methods for Network Component AnalysisNeil Jacklin, Zhi Ding, Wei Chen — 2012
• Pathway modeling of microarray data: a case study of pathway activity changes in the testis following in utero exposure to dibutyl phthalate (DBP).Meric Ovacik, Banalata Sen, Susan Y. Euling — 2013
• Application of one-step singular correlation in random-across probability modelingChao Liu, Xinghua Zhang, Bing Shi — 2011
• Dynamics of dendritic cell maturation are identified through a novel filtering strategy applied to biological time-course microarray replicatesAmy L. Olex, Elizabeth M. Hiltbold, Xiaoyan Leng — 2010
• Discovering transcriptional modules by Bayesian data integrationRichard S. Savage, Zoubin Ghahramani, Jim E. Griffin — 2010
• Systems biology coupled with label-free high-throughput detection as a novel approach for diagnosis of chronic obstructive pulmonary diseaseJoanna L. Richens, Richard A. Urbanowicz, Elizabeth A. M. Lunt — 2009
• Inference of Gene Regulatory Networks with Variable Time Delay from Time-Series Microarray DataOla ElBakry, M. Omair Ahmad, M.N.S. Swamy — 2013
• A Generalized Multivariate Approach to Pattern Discovery from Replicated and Incomplete Genome-Wide MeasurementsDongxiao Zhu, Lipi Acharya, Hui Zhang — 2011
• Extended local similarity analysis (eLSA) of microbial community and other time series data with replicatesLi C Xia, Joshua A. Steele, Jacob A. Cram — 2011
• Importance of replication in analyzing time-series gene expression data: Corticosteroid dynamics and circadian patterns in rat liverTung Nguyen, Richard R. Almon, Debra C. DuBois — 2010
• Viral diagnostics and analysis of host response to viral infection using microarray technologyHui Chen — 2014
• An ancient and conserved function for Armadillo‐related proteins in the control of spore and seed germination by abscisic acidLaura A. Moody, Younousse Saidi, Daniel J. Gibbs — 2016
• Pooled shrinkage estimator for quadratic discriminant classifier: an analysis for small sample sizes in face recognitionSyed Shahnewaz Ali, Tamanna Howlader, S. M. Mahbubur Rahman — 2016
• The decision to germinate is regulated by divergent molecular networks in spores and seedsEleanor F. Vesty, Younousse Saidi, Laura A. Moody — 2016
• Privacy-Preserving Similar Patient Queries for Combined Biomedical DataAhmed Salem, Pascal Berrang, Mathias Humbert — 2018
• A systematic comparison of genome-scale clustering algorithmsJeremy J. Jay, John D. Eblen, Yun Zhang — 2011

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