ReXSpecies – a tool for the analysis of the evolution of gene regulation across species
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Summary
ReXSpecies post-processes the information provided by transcription factor binding site prediction tools, in order to compare data from many species, and eases visualization and successive interpretation of transcription factorbinding data in an evolutionary context.
- Type
- article
- Published
- 2008-04-14
- Cited by
- 13
- References
- 47
- Access
- Open access
- OpenAlex
- https://openalex.org/W18410675
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:1077189
Keywords
Art, Humanities, Philosophy
References
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- PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
- Lightweight Directory Access Protocol
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- Oct-3/4 and Sox2 Regulate Oct-3/4 Gene in Embryonic Stem Cells*
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- Core transcriptional regulatory circuitry in human embryonic stem cells.
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- Phylogenetic Analysis Under Dollo's Law
Cited by
- Molecular Evolution of the Thyrotrophin‐Releasing Hormone Precursor in Vertebrates: Insights From Comparative Genomics
- Visualization and Exploration of Conserved Regulatory Modules Using ReXSpecies 2
- Identification of functionally related genes using data mining and data integration: a breast cancer case study
- Evolution of gene regulation of pluripotency - the case for wiki tracks at genome browsers
- Evolution of gene regulation - on the road towards computational inferences
- IDENTIFICATION OF CO- REGULATED CANDIDATE GENES BY PROMOTER ANALYSIS
- Accuracy of morphology-based phylogenetic fossil placement under Maximum Likelihood
- Deep metazoan phylogeny : the backbone of the tree of life : new insights from analyses of molecules, morphology, and theory of data analysis
- Phylogeny-Aware Placement and Alignment Methods for Short Reads
- List of Contributing Authors
- Algorithm That Finds Gain/loss Patterns 1 Purpose
- Morphology-based phylogenetic binning of the lichen genera Allographa and Graphis via molecular site weight calibration
- Evolution of gene regulationçon the road towards computational inferences
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