The optimization of protein secondary structure determination with infrared and circular dichroism spectra.
Explore this paper's citation graph
Summary
It is found that the amide II band has high information content and could be used alone for secondary structure prediction in place of amide I and only the comparison of analyses run on circular dichroism and infrared spectra independently is able to identify failed solutions in the absence of known structure.
- Type
- article
- Published
- 2004-07-01
- Cited by
- 188
- References
- 51
- Access
- Open access
- OpenAlex
- https://openalex.org/W15233789
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:12483852
Keywords
Mathematics
References
- An infrared and circular dichroism combined approach to the analysis of protein secondary structure.
- Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set.
- Protein secondary structure from Fourier transform infrared and/or circular dichroism spectra.
- Prediction of protein secondary structure from circular dichroism spectra: an attempt to solve the problem of the best-fitting reference protein subsets.
- Evaluation of methods for the prediction of membrane protein secondary structures.
- Differentiation between transmembrane helices and peripheral helices by the deconvolution of circular dichroism spectra of membrane proteins
- Secondary structure analysis of purified functional CHIP28 water channels by CD and FTIR spectroscopy.
- Secondary structure and dosage of soluble and membrane proteins by attenuated total reflection Fourier-transform infrared spectroscopy on hydrated films.
- Anomalous amide I infrared absorption of purple membrane.
- Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. III. Estimation of the protein secondary structure
- The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
- Relevance of Protein Thin Films Prepared for Attenuated Total Reflection Fourier Transform Infrared Spectroscopy: Significance of the pH
- Determination of protein tertiary structure class from circular dichroism spectra.
- Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features
- Peptide-chain secondary structure of bacteriorhodopsin.
- Predictions of secondary structure using statistical analyses of electronic and vibrational circular dichroism and Fourier transform infrared spectra of proteins in H2O.
- An Algorithm for the Reproducible Spectral Subtraction of Water from the FT-IR Spectra of Proteins in Dilute Solutions and Adsorbed Monolayers
- Contributions of tryptophan side chains to the far-ultraviolet circular dichroism of proteins
- Comparison of and limits of accuracy for statistical analyses of vibrational and electronic circular dichroism spectra in terms of correlations to and predictions of protein secondary structure
- The SWISS-PROT protein sequence data bank.
Cited by
- Secondary structure of proteins analyzed ex vivo in vascular wall in diabetic animals using FT-IR spectroscopy.
- Using machine learning to determine fold class and secondary structure content from Raman optical activity and Raman vibrational spectroscopy
- Study of the molecular mechanism used by the peptidic vector pep-1 to introduce proteins inside cells
- FTIR spectral signature of anticancer drugs. Can drug mode of action be identified?
- Studying the Physical Stability of BSA at the Bulk Solution and Oil/Water Interface
- The development and current state of protein circular dichroism
- Analysis of saliva by Fourier transform infrared spectroscopy for diagnosis of physiological stress in athletes
- Infrared spectroscopy as a new tool for the screening of antitumoral agents inducing original therapeutic action
- Two distinct β-sheet structures in Italian-mutant amyloid-beta fibrils: a potential link to different clinical phenotypes
- IR spectroscopy as a new tool for evidencing antitumor drug signatures.
- TG and DSC studies of bone tissue: Effects of osteoporosis
- Preparation, Optimization and Characterization of Bovine Lactoferrin‐loaded Liposomes and Solid Lipid Particles Modified by Hydrophilic Polymers Using Factorial Design
- Structural dynamics of the manganese-stabilizing protein-effect of pH, calcium, and manganese.
- Study of Thermal Dynamics of Defatted Bovine Serum Albumin in D2O Solution by Fourier Transform Infrared Spectra and Evolving Factor Analysis
- Biomimetic synthesis and assembly of HgS nanocrystals via a protein inducing process
- Bet v 1-like pollen allergens of multiple Fagales species can sensitize atopic individuals
- Infrared spectroscopy for biopharmaceutical protein analysis.
- Infrared spectroscopy of proteins.
- Amphetamine effects on brain protein structure and oxidative stress as revealed by FTIR microspectroscopy.
- On the specificity of the amide VI band for the secondary structure of proteins
Related papers
No related papers recorded.