What should the Z‐score of native protein structures be?

Keywords

Computer science, Web browser, World Wide Web, Multimedia, Web page

References

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Cited by

• An efficient potential for protein sequence designG. Weberndorfer, Ivo L. Hofacker, Peter F. Stadler — 1999
• How the “Folding Funnel” Depends on Size and Structure of Proteins？A View from the Scoring Function PerspectiveSheng‐You Huang, Gordon K. Springer — 2013
• Amino acid empirical contact energy definitions for fold recognition in the space of contact mapsMarco Berrera, Henriette Molinari, Federico Fogolari — 2003
• Correlation between rate of folding, energy landscape, and topology in the folding of a model protein HP-36Arnab Mukherjee, Biman Bagchi — 2003
• Inter-residue interactions in protein structures exhibit power-law behavior.Jun Gao, Zhijun Li — 2008
• Information‐theoretic dissection of pairwise contact potentialsMelissa Cline, Kevin Karplus, Richard H. Lathrop — 2002
• Knowledge based potentials : the reverse boltzmann methodology, virtual screening and molecular weight dependenceChrysi Konstantinou Kirtay, John B. O. Mitchell, James A. Lumley — 2005
• Filtered neighbors threadingJadwiga Biénkowska, Robert G. Rogers, Temple F. Smith — 1999
• Residue frequencies and pairing preferences at protein–protein interfacesFabian Glaser, David M. Steinberg, Ilya A. Vakser — 2001
• Exploring insights for virulent gene inhibition of multidrug resistant Salmonella typhi, Vibrio cholerae, and Staphylococcus areus by potential phytoligands via in silico screeningSinosh Skariyachan, Nisha Grandhi Jayaprakash, Navya Bharadwaj — 2014
• Membrane protein native state discrimination by implicit membrane modelsOlga Yuzlenko, Themis Lazaridis — 2012
• Modeling protein density of states: Additive hydrophobic effects are insufficient for calorimetric two‐state cooperativityHue Sun Chan — 2000
• A new generation of statistical potentials for proteins.Yves Dehouck, Dimitri Gilis, Marianne Rooman — 2006
• The role of secondary structure in protein structure selectionYongyun Ji, You‐Quan Li — 2010
• Performance of Threading Scoring Functions Designed Using New Optimization MethodJadwiga Biénkowska, Robert G. Rogers, Temple F. Smith — 1999
• How to generate improved potentials for protein tertiary structure prediction: A lattice model studyTing-Lan Chiu, Richard A. Goldstein — 2000
• Distinguish protein decoys by Using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent modelMathew C. Lee, Yong Duan — 2004
• Information and discrimination in pairwise contact potentialsArmando D. Solis, S. Rackovsky — 2008
• Comparison of two optimization methods to derive energy parameters for protein folding: Perceptron and Z scoreMichele Vendruscolo, Leonid A. Mirny, Eugene I. Shakhnovich — 2000
• What is the protein design alphabet?Nikolay V. Dokholyan — 2004

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