Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.
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Summary
A total of 20 P1 clones with an average insert size of 80 kb and each containing a marker(s) specifically mapped on chromosome 5 were isolated from a P1 library of the Arabidopsis thaliana genome, and their nucleotide sequences were determined according to a shotgun-based strategy and precisely located on the physical map of chromosome 5 separately constructed.
- Type
- article
- Published
- 1997-01-01
- Cited by
- 79
- References
- 21
- Access
- Open access
- OpenAlex
- https://openalex.org/W2162813837
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:15182380
Keywords
Biology, Gene, Genetics, Intron, Gene prediction
References
- Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.
- First Global Sequencing Effort Begins
- Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.
- The CIC library: a large insert YAC library for genome mapping in Arabidopsis thaliana.
- Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs.
- A physical map of chromosome 2 of Arabidopsis thaliana.
- The Minimal Gene Complement of Mycoplasma genitalium
- Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach.
- Basic local alignment search tool.
- Generation of a high-quality P1 library of Arabidopsis suitable for chromosome walking
- Isolation and mapping of a new set of 129 RFLP markers in Arabidopsis thaliana using recombinant inbred lines.
- Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames.
- Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64% to 92% of the genome.
- Genes Galore: A Summary of Methods for Accessing Results from Large-Scale Partial Sequencing of Anonymous Arabidopsis cDNA Clones
- Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information.
- Description of 31 YAC contigs spanning the majority of Arabidopsis thaliana chromosome 5.
- tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
- Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement).
- Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii
- Basic Local Alignment Search Tool
Cited by
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- Goodbye to 'one by one' genetics
- Genome sequencing approaches and successes.
- Fine sequence analysis of 60 kb around the Arabidopsis thaliana AtEm1 locus on chromosome III
- Structural and functional characterization of the phytoene synthase promoter from Arabidopsis thaliana
- A High-throughput Gene Discovery System for Arabidopsis Genome Sequencing Project
- Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
- Purification and cloning of chloroplast 6-phosphogluconate dehydrogenase from spinach. Cyanobacterial genes for chloroplast and cytosolic isoenzymes encoded in eukaryotic chromosomes.
- In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants
- Organization and structural evolution of four multigene families in Arabidopsis thaliana: AtLCAD, AtLGT, AtMYST and AtHD-GL2
- Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis thaliana
- Large-Scale Sequence Analyses in the Arabidopsis thaliana Genome Sequencing Project: Status 2000
- Redox Regulation of Arabidopsis 3-Deoxy-d-arabino-Heptulosonate 7-Phosphate Synthase1
- Arabidopsis thaliana: a model plant for genome analysis.
- Development of a Bacterial Cell Enrichment Method and its Application to the Community Analysis in Soybean Stems
- Dual Role of Plasma Membrane Electron Transport Systems in Defense
- Molecular characterization of the B' regulatory subunit gene family of Arabidopsis protein phosphatase 2A.
- Establishment of framework P1 clones for map-based cloning and genome sequencing: direct RFLP mapping of large clones.
- Expression of the maize GALACTINOL SYNTHASE gene family: (I) Expression of two different genes during seed development and germination
- Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones.
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