Analytical Methods for Immunogenetic Population Data
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Summary
This chapter describes analyses commonly applied to immunogenetic population data, along with software tools that are currently available to perform those analyses and analytical methods that serve both as a means to examine the appropriateness of a dataset for testing a specific hypothesis.
- Type
- article
- Published
- 2012-01-01
- Cited by
- 15
- References
- 96
- Access
- Open access
- OpenAlex
- https://openalex.org/W6070398
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:22457780
Keywords
Computer science, Population, Protocol (science), Focus (optics), Data science
References
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- HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.
- Genetic distance between populations
- MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers
- Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data.
- Gametic disequilibrium measures: proceed with caution.
- LDheatmap: An R Function for Graphical Display of Pairwise Linkage Disequilibria Between Single Nucleotide Polymorphisms
- An E-M algorithm and testing strategy for multiple-locus haplotypes.
- Discordant patterns of linkage disequilibrium of the peptide-transporter loci within the HLA class II region.
- Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms.
- Evolution and the Genetics of Populations, Volume 3: Experimental Results and Evolutionary Deductions
- The sampling theory of selectively neutral alleles.
- A comparison of tests for Hardy-Weinberg equilibrium.
- An exact test for Hardy-Weinberg and multiple alleles.
- Analysis of intron sequences at the class II HLA-DRB1 locus: implications for the age of allelic diversity.
- A disequilibrium coefficient approach to Hardy-Weinberg testing.
- Analysis of population genetic structure with RAPD markers
- TESTING METHODS OF EVOLUTIONARY TREE CONSTRUCTION
Cited by
- Comprehensive identification of high-frequency and combination MHC-DMA and -DMB alleles in a cohort of Chinese rhesus macaques and cynomolgus macaques of Vietnamese origin.
- Population tailored modification of tuberculosis specific interferon-gamma release assay
- Bridging Immunogenomic Data Analysis Workflow Gaps (bigdawg): An Integrated Case-Control Analysis Pipeline
- HLA Disease Associations: Detecting Primary and Secondary Disease Predisposing Genes
- Distribution of HLA-A, -B and -DRB1 antigenic groups and haplotypes from the Brazilian bone marrow donor registry (REDOME).
- HLA Haplotype Frequencies and Genetic Profiles of the Kuwaiti Population
- A snapshot of human leukocyte antigen (HLA) diversity using data from the Allele Frequency Net Database.
- Allogeneic hematopoietic stem cell transplant recipients in Spain: Human leukocyte antigen characteristics and diversity by high‐resolution analysis
- High Resolution HLA ∼A, ∼B, ∼C, ∼DRB1, ∼DQA1, and ∼DQB1 Diversity in South African Populations
- Killer-Cell Immunoglobulin-like Receptor Diversity in an Admixed South American Population
- KIR genotype and haplotype frequencies in the multi-ethnic population of Malaysia.
- High Resolution Class I HLA -A, -B, and -C Diversity in Eastern and Southern African Populations
- High resolution class I HLA-A, -B, and -C diversity in Eastern and Southern African populations
- The HLA landscape of Colombia: a high-resolution analysis of 11,576 blood donors
- analysis of intra and inter population HLA diversity in Crete for the creation of a regional public cord blood bank”
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